ROXAS Configuration Library
On this page you can find a collection of ROXAS configuration files. Use a configuration file whose thumbnail image resembles your own samples as a starting point for customizing your own configuration.
Instruction
- Download one to several configuration files (*.rsf) and copy-paste them into the configuration folder (in ROXAS main window, push 'Manage configuration files' to access the folder)
- Re-launch ROXAS. The added configuration(s) will appear in the configuration list in the ROXAS main window.
- Adjust the configuration file(s) of choice as described in the ROXAS Manual.
Note: Configurations are rather specific! They are usually optimized for all of the following: the anatomy of a given species, the plant organ, the sample processing and staining technique, the image capturing system (microscope, camera, scanner), and the image resolution.
Using configuration files with ROXAS
Any new version of ROXAS is able to use an old configuration file, however don't use a new configuration file with an older ROXAS version! As ROXAS is developing, new settings are added to the configuration files, which an older ROXAS version does not support.
Contribute yourself
If you defined a new configuration that works well on your samples and you want to see it on this page, please contact me!
Download all configuration files
>>> ... Download all configuration files (last updated: 1 April 2016) ... <<<
Individual configurations - Angiosperms
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Configuration Species Date Tissue Tissue age Type Sample processing Staining Image capturing Image resolution Conduit area Ring detection configured Image credit |
Fraxinus_excelsior_0.945.rsf Fraxinus excelsior 4 January 2017 Branch Young Circular Thin sections Safranin – astra blue Transmitted-light microscope 0.945 pix / µm 150-15,000 µm2 No Georg von Arx |
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Configuration Species Date Tissue Tissue age Type Sample processing Staining Image capturing Image resolution Conduit area Ring detection configured Image credit |
Acacia_greggii_0.752.rsf Acacia greggii 1 April 2016 Root collar Seedling Circular Thin sections Phloroglucinol-HCl Transmitted-light microscope 0.752 pix / µm 500-4500 µm2 No Steven Woods |
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Configuration Species Date Tissue Tissue age Type Sample processing Staining Image capturing Image resolution Conduit area Ring detection configured Image credit |
Betula_pubescens_0.988.rsf Betula pubescens 1 April 2016 Stem Mature Linear Thin sections Methylene blue Transmitted-light microscope 0.988 pix / µm 170-4000 µm2 No Marina Bryukhanova |
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Configuration Species Date Tissue Tissue age Type Sample processing Staining Image capturing Image resolution Conduit area Ring detection configured Image credit |
Betula_nana_0.945.rsf Betula nana 1 April 2016 Stem Mature Circular Thin sections Safranin – astra blue Transmitted-light microscope 0.945 pix / µm 500-8000 µm2 No Sigrid Nielsen |
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Configuration Species Date Tissue Tissue age Type Sample processing Staining Image capturing Image resolution Conduit area Ring detection configured Image credit |
Fagus_sylvatica_stem_0.456.rsf Fagus sylvatica 1 April 2016 Stem Young tree Linear Thin sections Safranin – astra blue Transmitted-light microscope 0.456 pix / µm 40-6000 µm2 No Britta Eilmann |
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Configuration Species Date Tissue Tissue age Type Sample processing Staining Image capturing Image resolution Conduit area Ring detection configured Image credit |
Quercus_robur_1500dpi.rsf Quercus petraea & robur 1 April 2016 Stem Mature Linear Surface preparation Black marker, chalk powder Scanner 0.059 pix / µm (1500 dpi) 1000-140,000 µm2 Yes Patrick Fonti |
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Configuration Species Date Tissue Tissue age Type Sample processing Staining Image capturing Image resolution Conduit area Ring detection configured Image credit |
Salix_polaris_0.752.rsf Salix polaris 1 April 2016 Stem Mature Circular Thin sections Safranin – Astra blue Transmitted-light microscope 0.752 pix / µm 400-8000 µm2 No Agata Buchwal |
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Individual configurations - Conifers
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Configuration Species Date Tissue Tissue age Type Sample processing Staining Image capturing Image resolution Conduit area Ring detection configured Image credit |
Larix_decidua_2.074.rsf Larix decidua 1 April 2016 Branch Small treeline tree Linear Thin sections Safranin Transmitted-light microscope (100x) 2.074 pix / µm 5-1000 µm2 Yes Angela Luisa Prendin |
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Configuration Species Date Tissue Tissue age Type Sample processing Staining Image capturing Image resolution Conduit area Ring detection configured Image credit |
Picea_abies_0.833.rsf Picea abies 1 April 2016 Stem Mature Linear Thin sections Safranin Transmitted-light microscope (40x) 0.833 pix / µm 5-2000 µm2 Yes Giai Petit |
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Configuration Species Date Tissue Tissue age Type Sample processing Staining Image capturing Image resolution Conduit area Ring detection configured Image credit |
Pinus_leucodermis_0.833.rsf Pinus leucodermis 1 April 2016 Stem Mature Linear Thin sections Safranin Transmitted-light microscope 40x) 0.833 pix / µm Yes 5-2000 µm2 Marco Carrer |
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Configuration Species Date Tissue Tissue age Type Sample processing Staining Image capturing Image resolution Conduit area Ring detection configured Image credit |
Pinus_sylvestris_2.083.rsf Pinus sylvestris 1 April 2016 Stem Mature Linear Thin sections Safranin Transmitted-light microscope (100x) 2.0830 pix / µm 5-2000 µm2 Yes Marco Carrer |
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Configuration Species Date Tissue Tissue age Type Sample processing Staining Image capturing Image resolution Conduit area Ring detection configured Image credit |
Pinus_sylvestris_2.3613.rsf Pinus sylvestris 1 April 2016 Stem Mature Linear Thin sections Safranin-Astrablue Transmitted-light microscope (100x) 2.3613 pix / µm 5-2000 µm2 Yes Georg von Arx |
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Individual configurations - Needles
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Configuration Species Date Tissue Tissue age Type Image capturing Settings Image resolution Needle area Image credit |
Needles.rsf Pinus sylvestris 1 April 2016 Needles Branch of mature tree Linear Flatbed scanner Transparency 300 dpi (11.811 pix / mm) 2-500 mm2 Georg von Arx |
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