Dr. Felix Gugerli Künzle

Guillaume, A.S.; Leempoel, K.; Rochat, E.; Rogivue, A.; Kasser, M.; Gugerli, F.; Parisod, C.; Joost, S., 2021: Multiscale very high resolution topographic models in alpine ecology: pros and cons of airborne LiDAR and drone-based stereo-photogrammetry technologies. Remote Sensing, 13, 8: 1588 (18 pp.). doi: 10.3390/rs13081588

Pärli, R.; Lieberherr, E.; Holderegger, R.; Gugerli, F.; Widmer, A.; Fischer, M.C., 2021: Developing a monitoring program of genetic diversity: what do stakeholders say?. Conservation Genetics, 22: 673-684. doi: 10.1007/s10592-021-01379-6

Martínez-Sancho, E.; Slámová, L.; Morganti, S.; Grefen, C.; Carvalho, B.; Dauphin, B.; Rellstab, C.; Gugerli, F.; Opgenoorth, L.; Heer, K.; Von Arx, G.; Fonti, P., 2020: The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe. Scientific Data, 7: 1 (7 pp.). doi: 10.1038/s41597-019-0340-y

Rellstab, C.; Zoller, S.; Sailer, C.; Tedder, A.; Gugerli, F.; Shimizu, K.K.; Holderegger, R.; Widmer, A.; Fischer, M.C., 2020: Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species. Molecular Ecology, 29, 22: 4350-4365. doi: 10.1111/mec.15648

Dauphin, B.; Rellstab, C.; Schmid, M.; Zoller, S.; Karger, D.N.; Brodbeck, S.; Guillaume, F.; Gugerli, F., 2020: Genomic vulnerability to rapid climate warming in a tree species with a long generation time. Global Change Biology, 27, 6: 1181-1195. doi: 10.1111/gcb.15469

Dauphin, B.; Wüest, R.O.; Brodbeck, S.; Zoller, S.; Fischer, M.C.; Holderegger, R.; Gugerli, F.; Rellstab, C., 2020: Disentangling the effects of geographic peripherality and habitat suitability on neutral and adaptive genetic variation in Swiss stone pine. Molecular Ecology, 29, 11: 1972-1989. doi: 10.1111/mec.15467

Csilléry, K.; Ovaskainen, O.; Sperisen, C.; Buchmann, N.; Widmer, A.; Gugerli, F., 2020: Adaptation to local climate in multi-trait space: evidence from silver fir (Abies alba Mill.) populations across a heterogeneous environment. Heredity, 124: 77-92. doi: 10.1038/s41437-019-0240-0

Schenker, L.; Bollmann, K.; Rehnus, M.; Brodbeck, S.; Gugerli, F., 2020: Hare's affairs: lessons learnt from a noninvasive genetic monitoring for tracking mountain hare individuals. Ecology and Evolution, 10, 18: 10150-10166. doi: 10.1002/ece3.6676

Trivellone, V.; Meier, M.; Cara, C.; Pollini Paltrinieri, L.; Gugerli, F.; Moretti, M.; Wolf, S.; Collatz, J., 2020: Multiscale determinants drive parasitization of drosophilidae by hymenopteran parasitoids in agricultural landscapes. Insects, 11, 6: 334 (18 pp.). doi: 10.3390/insects11060334

Reutimann, O.; Gugerli, F.; Rellstab, C., 2020: A species-discriminatory single-nucleotide polymorphism set reveals maintenance of species integrity in hybridizing European white oaks (Quercus spp.) despite high levels of admixture. Annals of Botany, 125, 4: 663-676. doi: 10.1093/aob/mcaa001

Rogivue, A.; Choudhury, R.R.; Zoller, S.; Joost, S.; Felber, F.; Kasser, M.; Parisod, C.; Gugerli, F., 2019: Genome‐wide variation in nucleotides and retrotransposons in alpine populations ofArabis alpina (Brassicaceae). Molecular Ecology Resources, 19, 3: 773-787. doi: 10.1111/1755-0998.12991

Choudhury, R.R.; Rogivue, A.; Gugerli, F.; Parisod, C., 2019: Impact of polymorphic transposable elements on linkage disequilibrium along chromosomes. Molecular Ecology, 28, 6: 1550-1562. doi: 10.1111/mec.15014

Rellstab, C.; Dauphin, B.; Zoller, S.; Brodbeck, S.; Gugerli, F., 2019: Using transcriptome sequencing and pooled exome capture to study local adaptation in the giga‐genome of Pinus cembra. Molecular Ecology Resources, 19, 2: 536-551. doi: 10.1111/1755-0998.12986

Mosca, E.; Cruz, F.; Gómez-Garrido, J.; Bianco, L.; Rellstab, C.; Brodbeck, S.; Csilléry, K.; Fady, B.; Fladung, M.; Fussi, B.; Gömöry, D.; González-Martínez, S.C.; Grivet, D.; Gut, M.; Hansen, O.K.; Heer, K.; Kaya, Z.; Krutovsky, K.V.; Kersten, B.; ... Neale, D.B., 2019: A reference genome sequence for the European silver fir (Abies alba Mill.): a community-generated genomic resource. G3: Genes, Genomes, Genetics, 9, 7: 2039-2049. doi: 10.1534/g3.119.400083

Holderegger, R.; Balkenhol, N.; Bolliger, J.; Engler, J.O.; Gugerli, F.; Hochkirch, A.; Nowak, C.; Segelbacher, G.; Widmer, A.; Zachos, F.E., 2019: Conservation genetics: linking science with practice. Molecular Ecology, 28, 17: 3848-3856. doi: 10.1111/mec.15202

Neuschulz, E.L.; Merges, D.; Bollmann, K.; Gugerli, F.; Böhning-Gaese, K., 2018: Biotic interactions and seed deposition rather than abiotic factors determine recruitment at elevational range limits of an alpine tree. Journal of Ecology, 106, 3: 948-959. doi: 10.1111/1365-2745.12818

Schoville, S.D.; Dalongeville, A.; Viennois, G.; Gugerli, F.; Taberlet, P.; Lequette, B.; Alvarez, N.; Manel, S., 2018: Preserving genetic connectivity in the European Alps protected area network. Biological Conservation, 218: 99-109. doi: 10.1016/j.biocon.2017.12.017

Rogivue, A.; Graf, R.; Parisod, C.; Holderegger, R.; Gugerli, F., 2018: The phylogeographic structure of Arabis alpina in the Alps shows consistent patterns across different types of molecular markers and geographic scales. Alpine Botany, 128, 1: 35-45. doi: 10.1007/s00035-017-0196-8

Lendvay, B.; Hartmann, M.; Brodbeck, S.; Nievergelt, D.; Reinig, F.; Zoller, S.; Parducci, L.; Gugerli, F.; Büntgen, U.; Sperisen, C., 2018: Improved recovery of ancient DNA from subfossil wood – application to the world's oldest Late Glacial pine forest. New Phytologist, 217, 4: 1737-1748. doi: 10.1111/nph.14935

Sailer, C.; Babst-Kostecka, A.; Fischer, M.C.; Zoller, S.; Widmer, A.; Vollenweider, P.; Gugerli, F.; Rellstab, C., 2018: Transmembrane transport and stress response genes play an important role in adaptation of Arabidopsis halleri to metalliferous soils. Scientific Reports, 8: 16085 (13 pp.). doi: 10.1038/s41598-018-33938-2

Luqman, H.; Muller, R.; Vaupel, A.; Brodbeck, S.; Bolliger, J.; Gugerli, F., 2018: No distinct barrier effects of highways and a wide river on the genetic structure of the Alpine newt (Ichthyosaura alpestris) in densely settled landscapes. Conservation Genetics, 19, 3: 673-685. doi: 10.1007/s10592-018-1046-y

Rellstab, C.; Fischer, M.C.; Zoller, S.; Graf, R.; Tedder, A.; Shimizu, K.K.; Widmer, A.; Holderegger, R.; Gugerli, F., 2017: Local adaptation (mostly) remains local: reassessing environmental associations of climate-related candidate SNPs in Arabidopsis halleri. Heredity, 118, 2: 193-201. doi: 10.1038/hdy.2016.82

Milanesi, P.; Holderegger, R.; Bollmann, K.; Gugerli, F.; Zellweger, F., 2017: Three-dimensional habitat structure and landscape genetics: a step forward in estimating functional connectivity. Ecology, 98, 2: 393-402. doi: 10.1002/ecy.1645

Fischer, M.C.; Rellstab, C.; Leuzinger, M.; Roumet, M.; Gugerli, F.; Shimizu, K.K.; Holderegger, R.; Widmer, A., 2017: Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri. BMC Genomics, 18: 69 (15 pp.). doi: 10.1186/s12864-016-3459-7

Thiel-Egenter, C., 2017: Naturschutzgenetik aus Ökobürosicht – Chancen und Erfahrungen. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 71-76.

Schmidt, B.R.; Grünig, C.R., 2017: Einsatz von eDNA im Amphibien-Monitoring. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 57-62.

Rellstab, C.; Fischer, M.C.; Csencsics, D.; Gugerli, F.; Holderegger, R., 2017: Bedeutung der lokalen Anpassung in der Naturschutzgenetik. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 31-37.

Meier, R.; Stapfer, A., 2017: Werkzeugkasten für genetische Methoden in der Biodiversitätsförderung. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 49-56.

Holderegger, R., 2017: Genetik im Naturschutz: eine Übersicht. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 7-13.

Hartmann, M.; Sperisen, C., 2017: Der Boden – eine wertvolle Ressource für die genetische Vielfalt. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 39-47.

Cordillot, F., 2017: Bedeutung der Naturschutzgenetik für den Bund. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 63-69.

Bühler, C.; Dubey, S., 2017: Application de la génétique de la conservation dans les bureaux d’études en écologie. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 77-82.

Bolliger, J.; Gugerli, F., 2017: Isoliert oder vernetzt? Auswirkungen der Landschaft auf den Genfluss. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 23-29.

Biebach, I.; Keller, L., 2017: Inzucht und ihre Bedeutung für den Naturschutz. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 15-22.

Mosca, E.; Gugerli, F.; Eckert, A.J.; Neale, D.B., 2016: Signatures of natural selection on Pinus cembra and P. mugo along elevational gradients in the Alps. Tree Genetics and Genomes, 12, 1: 9 (15 pp.). doi: 10.1007/s11295-015-0964-9

Rellstab, C.; Bühler, A.; Graf, R.; Folly, C.; Gugerli, F., 2016: Using joint multivariate analyses of leaf morphology and molecular-genetic markers for taxon identification in three hybridizing European white oak species (Quercus spp.). Annals of Forest Science, 73, 3: 669-679. doi: 10.1007/s13595-016-0552-7

Rellstab, C.; Zoller, S.; Walthert, L.; Lesur, I.; Pluess, A.R.; Graf, R.; Bodénès, C.; Sperisen, C.; Kremer, A.; Gugerli, F., 2016: Signatures of local adaptation in candidate genes of oaks (Quercus spp.) with respect to present and future climatic conditions. Molecular Ecology, 25, 23: 5907-5924. doi: 10.1111/mec.13889

Schmid, M.; Csencsics, D.; Gugerli, F., 2016: Repetitive flanking sequences challenge microsatellite marker development: a case study in the lepidopteran Melanargia galathea. Molecular Ecology Resources, 16, 6: 1499-1507. doi: 10.1111/1755-0998.12547

Rellstab, C.; Pluess, A.R.; Gugerli, F., 2016: Lokale Anpassung bei Waldbaumarten: genetische Prozesse und Bedeutung im Klimawandel. Schweizerische Zeitschrift für Forstwesen, 167, 6: 333-340. doi: 10.3188/szf.2016.0333

Frei, M.; Csencsics, D.; Brodbeck, S.; Schweizer, E.; Bühler, C.; Gugerli, F.; Bolliger, J., 2016: Combining landscape genetics, radio-tracking and long-term monitoring to derive management implications for Natterjack toads (Epidalea calamita) in agricultural landscapes. Journal for Nature Conservation, 32: 22-34. doi: 10.1016/j.jnc.2016.04.002

Burkart, S.; Gugerli, F.; Senn, J.; Kuehn, R.; Bolliger, J., 2016: Evaluating the functionality of expert-assessed wildlife corridors with genetic data from roe deer. Basic and Applied Ecology, 17, 1: 52-60. doi: 10.1016/j.baae.2015.09.001

Stockenhuber, R.; Zoller, S.; Shimizu-Inatsugi, R.; Gugerli, F.; Shimizu, K.K.; Widmer, A.; Fischer, M.C., 2015: Efficient detection of novel nuclear markers for Brassicaceae by transcriptome sequencing. PLoS One, 10, 6: e0128181 (19 pp.). doi: 10.1371/journal.pone.0128181

Rellstab, C.; Gugerli, F.; Eckert, A.J.; Hancock, A.M.; Holderegger, R., 2015: A practical guide to environmental association analysis in landscape genomics. Molecular Ecology, 24, 17: 4348-4370. doi: 10.1111/mec.13322

Neuschulz, E.L.; Mueller, T.; Bollmann, K.; Gugerli, F.; Böhning-Gaese, K., 2015: Seed perishability determines the caching behaviour of a food-hoarding bird. Journal of Animal Ecology, 84, 1: 71-78. doi: 10.1111/1365-2656.12283

Buehler, D.; Holderegger, R.; Brodbeck, S.; Schnyder, E.; Gugerli, F., 2014: Validation of outlier loci through replication in independent data sets: a test on Arabis alpina. Ecology and Evolution, 4, 22: 4296-4306. doi: 10.1002/ece3.1300

Lendvay, B.; Höhn, M.; Brodbeck, S.; Mîndrescu, M.; Gugerli, F., 2014: Genetic structure in Pinus cembra from the Carpathian Mountains inferred from nuclear and chloroplast microsatellites confirms post-glacial range contraction and identifies introduced individuals. Tree Genetics and Genomes, 10, 5: 1419-1433. doi: 10.1007/s11295-014-0770-9

Gerber, S.; Chadœuf, J.; Gugerli, F.; Lascoux, M.; Buiteveld, J.; Cottrell, J.; Dounavi, A.; Fineschi, S.; Forrest, L.L.; Fogelqvist, J.; Goicoechea, P.G.; Svejgaard Jensen, J.; Salvini, D.; Vendramin, G.G.; Kremer, A., 2014: High rates of gene flow by pollen and seed in oak populations across Europe. PLoS One, 9, 1: e85130 (16 pp.). doi: 10.1371/journal.pone.0085130

Steinbrecher, R.; Contran, N.; Gugerli, F.; Schnitzler, J.-P.; Zimmer, I.; Menard, T.; Günthardt-Goerg, M.S., 2013: Inter- and intra-specific variability in isoprene production and photosynthesis of Central European oak species. Plant Biology, 15, Suppl. 1: 148-156. doi: 10.1111/j.1438-8677.2012.00688.x

Zulliger, D.; Schnyder, E.; Gugerli, F., 2013: Are adaptive loci transferable across genomes of related species? Outlier and environmental association analyses in Alpine Brassicaceae species. Molecular Ecology, 22, 6: 1626-1639. doi: 10.1111/mec.12199

Rellstab, C.; Zoller, S.; Tedder, A.; Gugerli, F.; Fischer, M.C., 2013: Validation of SNP allele frequencies determined by pooled next-generation sequencing in natural populations of a non-model plant species. PLoS One, 8, 11: e80422 (10 pp.). doi: 10.1371/journal.pone.0080422

King, G.M.; Gugerli, F.; Fonti, P.; Frank, D.C., 2013: Tree growth response along an elevational gradient: climate or genetics?. Oecologia, 173, 4: 1587-1600. doi: 10.1007/s00442-013-2696-6

Gugerli, F.; Alvarez, N.; Tinner, W., 2013: A deep dig - hindsight on Holocene vegetation composition from ancient environmental DNA. Molecular Ecology, 22, 13: 3433-3436. doi: 10.1111/mec.12356

Fischer, M.C.; Rellstab, C.; Tedder, A.; Zoller, S.; Gugerli, F.; Shimizu, K.K.; Holderegger, R.; Widmer, A., 2013: Population genomic footprints of selection and associations with climate in natural populations of Arabidopsis halleri from the Alps. Molecular Ecology, 22, 22: 5594-5607. doi: 10.1111/mec.12521

Winkler, M.; Tribsch, A.; Schneeweiss, G.M.; Brodbeck, S.; Gugerli, F.; Holderegger, R.; Schönswetter, P., 2013: Strong nuclear differentiation contrasts with widespread sharing of plastid DNA haplotypes across taxa in European purple saxifrages (Saxifraga section Porphyrion subsection Oppositifoliae). Botanical Journal of the Linnean Society, 173, 4: 622-636. doi: 10.1111/boj.12104

Gugerli, F.; Brandl, R.; Castagneyrol, B.; Franc, A.; Jactel, H.; Koelewijn, H.; Martin, F.; Peter, M.; Pritsch, K.; Schröder, H.; Smulders, M.J.M.; Kremer, A.; Ziegenhagen, B.; Evoltree JERA3 contributors, 2013: Community genetics in the time of next-generation molecular technologies. Molecular Ecology, 22, 12: 3198-3207. doi: 10.1111/mec.12300

Buehler, D.; Poncet, B.N.; Holderegger, R.; Manel, S.; Taberlet, P.; Gugerli, F., 2013: An outlier locus relevant in habitat-mediated selection in an alpine plant across independent regional replicates. Evolutionary Ecology, 27, 2: 285-300. doi: 10.1007/s10682-012-9597-8

Taberlet, P.; Zimmermann, N.E.; Englisch, T.; Tribsch, A.; Holderegger, R.; Alvarez, N.; Niklfeld, H.; Coldea, G.; Mirek, Z.; Moilanen, A.; Steinmann, K.; Thiel-Egenter, C.; Wohlgemuth, T.; Gugerli, F.; IntraBioDiv Consortium, 2012: Genetic diversity in widespread species is not congruent with species richness in alpine plant communities. Ecology Letters, 15, 12: 1439-1448. doi: 10.1111/ele.12004

Salzer, K.; Gugerli, F., 2012: Reduced fitness at early life stages in peripheral versus core populations of Swiss stone pine (Pinus cembra) is not reflected by levels of inbreeding in seed families. Alpine Botany, 122, 2: 75-85. doi: 10.1007/s00035-012-0106-z

Manel, S.; Gugerli, F.; Thuiller, W.; Alvarez, N.; Legendre, P.; Holderegger, R.; Gielly, L.; Taberlet, P.; IntraBioDiv Consortium, 2012: Broad-scale adaptive genetic variation in alpine plants is driven by temperature and precipitation. Molecular Ecology, 21, 15: 3729-3738. doi: 10.1111/j.1365-294X.2012.05656.x

Hepenstrick, D.; Thiel, D.; Holderegger, R.; Gugerli, F., 2012: Genetic discontinuities in roe deer (Capreolus capreolus) coincide with fenced transportation infrastructure. Basic and Applied Ecology, 13, 7: 631-638. doi: 10.1016/j.baae.2012.08.009

Holderegger, R.; Gugerli, F., 2012: Where do you come from, where do you go? Directional migration rates in landscape genetics. Molecular Ecology, 21, 23: 5640-5642. doi: 10.1111/mec.12032

Landergott, U.; Gugerli, F.; Hoebee, S.E.; Finkeldey, R.; Holderegger, R., 2012: Effects of seed mass on seedling height and competition in European white oaks. Flora, 207, 10: 721-725. doi: 10.1016/j.flora.2012.09.001

Winkler, M.; Tribsch, A.; Schneeweiss, G.M.; Brodbeck, S.; Gugerli, F.; Holderegger, R.; Abbotts, R.J.; Schönswetter, P., 2012: Tales of the unexpected: phylogeography of the arctic-alpine model plant Saxifraga oppositifolia (Saxifragaceae) revisited. Molecular Ecology, 21, 18: 4618-4630. doi: 10.1111/j.1365-294X.2012.05705.x

Kormann, U.; Gugerli, F.; Ray, N.; Excoffier, L.; Bollmann, K., 2012: Parsimony-based pedigree analysis and individual-based landscape genetics suggest topography to restrict dispersal and connectivity in the endangered capercaillie. Biological Conservation, 152: 241-252. doi: 10.1016/j.biocon.2012.04.011

Kamm, U.; Gugerli, F.; Rotach, P.; Edwards, P.; Holderegger, R., 2012: Seltenes und zerstreutes Vorkommen: Auswirkungen auf den Paarungserfolg des Speierlings. Schweizerische Zeitschrift für Forstwesen, 163, 4: 130-136. doi: 10.3188/szf.2012/0130

Buehler, D.; Graf, R.; Holderegger, R.; Gugerli, F., 2012: Contemporary gene flow and mating system of Arabis alpina in a Central European alpine landscape. Annals of Botany, 109, 7: 1359-1367. doi: 10.1093/aob/mcs066

Barthe, S.; Gugerli, F.; Barkley, N.A.; Maggia, L.; Cardi, C.; Scotti, I., 2012: Always look on both sides: phylogenetic information conveyed by simple sequence repeat allele sequences. PLoS One, 7, 7: e40699 (9 pp.). doi: 10.1371/journal.pone.0040699

Waser, N.M.; Wirth, L.R.; Graf, R.; Gugerli, F.; Landergott, U.; Erhardt, A.; Linder, H.P.; Holderegger, R., 2011: Effects of floral neighborhood on seed set and degree of outbreeding in a high-alpine cushion plant. Oecologia, 167, 2: 427-434. doi: 10.1007/s00442-011-1985-1

Buehler, D.; Graf, R.; Holderegger, R.; Gugerli, F., 2011: Using the 454 pyrosequencing-based technique in the development of nuclear microsatellite loci in the alpine plant Arabis alpina (Brassicaceae). American Journal of Botany, 98, 5: e103-e105. doi: 10.3732/ajb.1000488

Kremer, A.; Vinceti, B.; Alia, R.; Burczyk, J.; Cavers, S.; Degen, B.; Finkeldey, R.; Fluch, S.; Gömöry, D.; Gugerli, F.; Koelewijn, H.P.; Koskela, J.; Lefèvre, F.; Morgante, M.; Mueller-Starck, G.; Plomion, C.; Taylor, G.; Turok, J.; Savolainen, O.; Ziegenhagen, B., 2011: Forest ecosystem genomics and adaptation: EVOLTREE conference report. Tree Genetics and Genomes, 7, 4: 869-875. doi: 10.1007/s11295-011-0378-2

Kamm, U.; Gugerli, F.; Rotach, P.; Edwards, P.; Holderegger, R., 2011: Genetic consequences of low local tree densities - implications for the management of naturally rare, insect pollinated species in temperate forests. Forest Ecology and Management, 262, 6: 1047-1053. doi: 10.1016/j.foreco.2011.05.040

Thiel-Egenter, C.; Alvarez, N.; Holderegger, R.; Tribsch, A.; Englisch, T.; Wohlgemuth, T.; Colli, L.; Gaudeul, M.; Gielly, L.; Jogan, N.; Linder, H.P.; Negrini, R.; Niklfeld, H.; Pellecchia, M.; Rioux, D.; Schönswetter, P.; Taberlet, P.; Van Loo, M.; Winkler, M.; ... Gugerli, F., 2011: Break zones in the distributions of alleles and species in alpine plants. Journal of Biogeography, 38, 4: 772-782. doi: 10.1111/j.1365-2699.2010.02441.x

Herrmann, D.; Poncet, B.N.; Manel, S.; Rioux, D.; Gielly, L.; Taberlet, P.; Gugerli, F., 2010: Selection criteria for scoring amplified fragment length polymorphisms (AFLPs) positively affect the reliability of population genetic parameter estimates. Genome, 53, 4: 302-310. doi: 10.1139/g10-006

Wirth, L.R.; Graf, R.; Gugerli, F.; Landergott, U.; Holderegger, R., 2010: Between-year variation in seed weights across altitudes in the high-alpine plant Eritrichium nanum. Plant Ecology, 207, 2: 227-231. doi: 10.1007/s11258-009-9667-3

Holderegger, R.; Buehler, D.; Gugerli, F.; Manel, S., 2010: Landscape genetics of plants. Trends in Plant Science, 15, 12: 675-683. doi: 10.1016/j.tplants.2010.09.002

Wirth, L.; Graf, R.; Gugerli, F.; Landergott, U.; Holderegger, R., 2010: Lower selfing rate at higher altitudes in the alpine plant Eritrichium nanum (Boraginaceae). American Journal of Botany, 97, 5: 899-901. doi: 10.3732/ajb.0900297

Poncet, B.N.; Herrmann, D.; Gugerli, F.; Taberlet, P.; Holderegger, R.; Gielly, L.; Rioux, D.; Thuiller, W.; Aubert, S.; Manel, S., 2010: Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina. Molecular Ecology, 19, 14: 2896-2907. doi: 10.1111/j.1365-294X.2010.04696.x

Kamm, U.; Gugerli, F.; Rotach, P.; Edwards, P.; Holderegger, R., 2010: Open areas in a landscape enhance pollen-mediated gene flow of a tree species: evidence from northern Switzerland. Landscape Ecology, 25, 6: 903-911. doi: 10.1007/s10980-010-9468-z

Jacob, G.; Debrunner, R.; Gugerli, F.; Schmid, B.; Bollmann, K., 2010: Field surveys of capercaillie (Tetrao urogallus) in the Swiss Alps underestimated local abundance of the species as revealed by genetic analyses of non-invasive samples. Conservation Genetics, 11, 1: 33-44. doi: 10.1007/s10592-008-9794-8

Manel, S.; Poncet, B.N.; Legendre, P.; Gugerli, F.; Holderegger, R., 2010: Common factors drive adaptive genetic variation at different spatial sclaes in Arabis alpina. Molecular Ecology, 19, 17: 3824-3835. doi: 10.1111/j.1365-294X.2010.04716.x

Gugerli, F.; Sperisen, C., 2010: Genetische Struktur von Waldbäumen im Alpenraum als Folge (post)glazialer Populationsgeschichte. Schweizerische Zeitschrift für Forstwesen, 161, 6: 207-215. doi: 10.3188/szf.2010.0207

Thiel-Egenter, C.; Holderegger, R.; Brodbeck, S.; IntraBioDiv Consortium; Gugerli, F., 2009: Concordant genetic breaks, identified by combining clustering and tessellation methods, in two co-distributed alpine plant species. Molecular Ecology, 18, 21: 4495-4507. doi: 10.1111/j.1365-294X.2009.04360.x

Gugerli, F.; Rüegg, M.; Vendramin, G., 2009: Gradual decline in genetic diversity in Swiss stone pine populations (Pinus cembra) across Switzerland suggests postglacial re-colonization into the Alps from a common eastern glacial refugium. Botanica Helvetica, 119, 1: 13-22. doi: 10.1007/s00035-009-0052-6

Höhn, M.; Gugerli, F.; Abran, P.; Bisztray, G.; Buonamici, A.; Cseke, K.; Hufnagel, L.; Quintela-Sabarís, C.; Sebastiani, F.; Vendramin, G.G., 2009: Variation in the chloroplast DNA of Swiss stone pine (Pinus cembra L.) reflects contrasting post-glacial history of populations from the Carpathians and the Alps. Journal of Biogeography, 36, 9: 1798-1806. doi: 10.1111/j.1365-2699.2009.02122.x

Kamm, U.; Rotach, P.; Gugerli, F.; Siroky, M.; Edwards, P.; Holderegger, R., 2009: Frequent long-distance gene flow in a rare temperate forest tree (Sorbus domestica) at the landscape scale. Heredity, 103, 6: 476-482. doi: 10.1038/hdy.2009.70

Alvarez, N.; Thiel-Egenter, C.; Tribsch, A.; Holderegger, R.; Manel, S.; Schönswetter, P.; Taberlet, P.; Brodbeck, S.; Gaudeul, M.; Gielly, L.; Küpfer, P.; Mansion, G.; Negrini, R.; Paun, O.; Pellecchia, M.; Rioux, D.; Schüpfer, F.; Van Loo, M.; Winkler, M.; ... IntraBioDiv Consortium, 2009: History or ecology? Substrate types as a major driver of spatial genetic structure in Alpine plants. Ecology Letters, 12, 7: 632-640. doi: 10.1111/j.1461-0248.2009.01312.x

Balkenhol, N.; Gugerli, F.; Cushman, S.A.; Waits, L.P.; Coulon, A.; Arntzen, J.W.; Holderegger, R.; Wagner, H.H., 2009: Identifying future research needs in landscape genetics: where to from here?. Landscape Ecology, 24: 455-463. doi: 10.1007/s10980-009-9334-z

Thiel-Egenter, C.; Gugerli, F.; Alvarez, N.; Brodbeck, S.; Cieslak, E.; Colli, L.; Englisch, T.; Gaudeul, M.; Gielly, L.; Korbecka, G.; Negrini, R.; Paun, O.; Pellecchia, M.; Rioux, D.; Ronikier, M.; Schönswetter, P.; Schüpfer, F.; Taberlet, P.; Tribsch, A.; ... IntraBioDiv Consortium, 2009: Effects of species traits on the genetic diversity of high-mountain plants: a multi-species study across the Alps and the Carpathians. Global Ecology and Biogeography, 18, 1: 78-87. doi: 10.1111/j.1466-8238.2008.00421.x

Salzer, K.; Sebastiani, F.; Gugerli, F.; Buonamici, A.; Vendramin, G.G., 2009: Isolation and characterization of polymorphic nuclear microsatellite loci in Pinus cembra L. Molecular Ecology Resources, 9, 3: 858-861. doi: 10.1111/j.1755-0998.2008.02396.x

Tollefsrud, M.M.; Kissling, R.; Gugerli, F.; Johnsen, Ø.; Skrøppa, T.; Cheddadi, R.; Van der Knaap, W.O.; Latałowa, M.; Terhürne-Berson, R.; Litt, T.; Geburek, T.; Brochmann, C.; Sperisen, C., 2008: Genetic consequences of glacial survival and postglacial colonization in Norway spruce: combined analysis of mitochondrial DNA and fossil pollen. Molecular Ecology, 17, 18: 4134-4150. doi: 10.1111/j.1365-294X.2008.03893.x

Gugerli, F.; Brodbeck, S.; Holderegger, R., 2008: Utility of multilocus genotypes for taxon assignment in stands of closely related European white oaks from Switzerland. Annals of Botany, 102, 5: 855-863. doi: 10.1093/aob/mcn164

Gugerli, F.; Gall, R.; Meier, F.; Wermelinger, B., 2008: Pronounced fluctuations of spruce bark beetle (Scolytinae: Ips typographus) populations do not invoke genetic differentiation. Forest Ecology and Management, 256, 3: 405-409. doi: 10.1016/j.foreco.2008.04.038

Holderegger, R.; Herrmann, D.; Poncet, B.; Gugerli, F.; Thuiller, W.; Taberlet, P.; Gielly, L.; Rioux, D.; Brodbeck, S.; Aubert, S.; Manel, S., 2008: Land ahead: using genome scans to identify molecular markers of adaptive relevance. Plant Ecology and Diversity, 1, 2: 273-283. doi: 10.1080/17550870802338420

Scotti, I.; Gugerli, F.; Pastorelli, R.; Sebastiani, F.; Vendramin, G.G., 2008: Maternally and paternally inherited molecular markers elucidate population patterns and inferred dispersal processes on a small scale within a subalpine stand of Norway spruce (Picea abies (L.) Karst.). Forest Ecology and Management, 255, 11: 3806-3812. doi: 10.1016/j.foreco.2008.03.023

Gugerli, F.; Englisch, T.; Niklfeld, H.; Tribsch, A.; Mirek, Z.; Ronikier, M.; Zimmermann, N.E.; Holderegger, R.; Taberlet, P.; IntraBioDiv Consortium, 2008: Relationships among levels of biodiversity and the relevance of intraspecific diversity in conservation - a project synopsis. Perspectives in Plant Ecology, Evolution and Systematics, 10, 4: 259-281. doi: 10.1016/j.ppees.2008.07.001

Gugerli, F.; Brodbeck, S.; Holderegger, R., 2008: Insertions-deletions in a microsatellite flanking region may be resolved by variation in stuttering patterns. Plant Molecular Biology Reporter, 26, 3: 255-262. doi: 10.1007/s11105-008-0034-7

Manel, S.; Berthoud, F.; Bellemain, E.; Gaudeul, M.; Luikart, G.; Swenson, J.E.; Waits, L.P.; Taberlet, P.; IntraBioDiv Consortium; Gugerli, F.; Holderegger, R.; Steinmann, K.; Thiel, C.; Wohlgemuth, T.; Zimmermann, N.; Brodbeck, S.; Schmatz, D.; Salanon, R., 2007: A new individual-based spatial approach for identifying genetic discontinuities in natural populations. Molecular Ecology, 16, 10: 2031-2043. doi: 10.1111/j.1365-294X.2007.03293.x

Ehrich, D.; Gaudeul, M.; Assefa, A.; Koch, M.A.; Mummenhoff, K.; Nemomissa, S.; IntraBioDiv Consortium; Brochmann, C.; Gugerli, F.; Steinmann, K.; Thiel, C.; Wohlgemuth, T.; Zimmermann, N.; Brodbeck, S.; Schmatz, D.; Salanon, R., 2007: Genetic consequences of Pleistocene range shifts: contrast between the Arctic, the Alps and the East African mountains. Molecular Ecology, 16, 12: 2542-2559. doi: 10.1111/j.1365-294X.2007.03299.x

Hoebee, S.E.; Arnold, U.; Düggelin, C.; Gugerli, F.; Brodbeck, S.; Rotach, P.; Holderegger, R., 2007: Mating patterns and contemporary gene flow by pollen in a large continuous and a small isolated population of the scattered forest tree Sorbus torminalis. Heredity, 99, 1: 47-55. doi: 10.1038/sj.hdy.6800962

Werth, S.; Gugerli, F.; Holderegger, R.; Wagner, H.H.; Csencsics, D.; Scheidegger, C., 2007: Landscape-level gene flow in Lobaria pulmonaria, an epiphytic lichen. Molecular Ecology, 16, 13: 2807-2815. doi: 10.1111/j.1365-294X.2007.03344.x

Gugerli, F.; Walser, J.-C.; Dounavi, K.; Holderegger, R.; Finkeldey, R., 2007: Coincidence of small-scale spatial discontinuities in leaf morphology and nuclear microsatellite variation of Quercus petraea and Q. robur in a mixed forest. Annals of Botany, 99, 4: 713-722. doi: 10.1093/aob/mcm006

Werth, S.; Wagner, H.H.; Gugerli, F.; Holderegger, R.; Csencsics, D.; Kalwij, J.M.; Scheidegger, C., 2006: Quantifying dispersal and establishment limitation in a population of an epiphytic lichen. Ecology, 87, 8: 2037-2046. doi: 10.1890/0012-9658(2006)87[2037:QDAELI]2.0.CO;2

Holderegger, R.; Kamm, U.; Gugerli, F., 2006: Adaptive vs. neutral genetic diversity: implications for landscape genetics. Landscape Ecology, 21, 6: 797-807. doi: 10.1007/s10980-005-5245-9

Fournier, N.; Rigling, A.; Dobbertin, M.; Gugerli, F., 2006: Faible différenciation génétique, à partir d'amplification aléatoire d'ADN polymorphe (RAPD), entre les types de pin sylvestre (Pinus sylvestris L.) d'altitude et de plaine dans les Alpes à climat continental. Annals of Forest Science, 63, 4: 431-439. doi: 10.1051/forest:2006023

Holderegger, R.; Angelone, S.; Brodbeck, S.; Csencsics, D.; Gugerli, F.; Hoebee, S.E.; Finkeldey, R., 2005: Application of genetic markers to the discrimination of pure European Black Poplar (Populus nigra) from American Black Poplar (P. deltoides) and Hybrid Poplars (P. x canadensis) in Switzerland. Trees: Structure and Function, 19, 6: 742-747. doi: 10.1007/s00468-005-0006-6

Wagner, H.H.; Holderegger, R.; Werth, S.; Gugerli, F.; Hoebee, S.E.; Scheidegger, C., 2005: Variogram analysis of the spatial genetic structure of continuous populations using multilocus microsatellite data. Genetics, 169, 3: 1739-1752. doi: 10.1534/genetics.104.036038

Holderegger, R.; Walser, J.; Gugerli, F.; Hoebee, S.E.; Scheidegger, C., 2005: Microsatellites reveal regional population differentiation and isolation in Lobaria pulmonaria, an epiphytic lichen. Molecular Ecology, 14, 2: 457-467. doi: 10.1111/j.1365-294x.2004.02423.x

Gugerli, F.; Parducci, L.; Petit, R.J., 2005: Ancient plant DNA: review and prospects. New Phytologist, 166, 2: 409-418. doi: 10.1111/j.1469-8137.2005.01360.x

Hilfiker, K.; Holderegger, R.; Rotach, P.; Gugerli, F., 2004: Dynamics of genetic variation in Taxus baccata: local versus regional perspectives. Canadian Journal of Botany, 82: 219-227. doi: 10.1139/B03-136

Walser, J.-C.; Gugerli, F.; Holderegger, R.; Kuonen, D.; Scheidegger, C., 2004: Recombination and clonal propagation in different populations of the lichen Lobaria pulmonaria. Heredity, 93, 4: 322-329. doi: 10.1038/sj.hdy.6800505

Hilfiker, K.; Gugerli, F.; Schütz, J.; Rotach, P.; Holderegger, R., 2004: Low RAPD variation and female-biased sex ratio indicate genetic drift in small populations of the dioecious conifer Taxus baccata in Switzerland. Conservation Genetics, 5, 3: 357-365. doi: 10.1023/B:COGE.0000031144.95293.1b

Gugerli, F.; Bauert, M.R., 2001: Growth and reproduction of Polygonum viviparum show weak responses to experimentally increased temperature at a Swiss Alpine site. Botanica Helvetica, 111, 2: 169-180. doi: 10.5169/seals-73907

Gugerli, F.; Holderegger, R., 2001: Nunatak survival, tabula rasa and the influence of the Pleistocene ice-ages on plant evolution in mountain areas. Trends in Plant Science, 6, 9: 397-398. doi: 10.1016/S1360-1385(01)02053-2

Gugerli, F.; Sperisen, C.; Büchler, U.; Brunner, I.; Brodbeck, S.; Palmer, J.D.; Qiu, Y., 2001: The evolutionary split of pinaceae from other conifers: evidence from an intron loss and a multigene phylogeny. Molecular Phylogenetics and Evolution, 21, 2: 167-175. doi: 10.1006/mpev.2001.1004

Gugerli, F.; Senn, J.; Anzidei, M.; Madaghiele, A.; Büchler, U.; Sperisen, C.; Vendramin, G.G., 2001: Chloroplast microsatellites and mitochondrial nad1 intron 2 sequences indicate congruent phylogenetic relationships among Swiss stone pine (Pinus cembra), Siberian stone pine (P. sibirica), and Siberian dwarf pine (P. pumila). Molecular Ecology, 10, 6: 1489-1497. doi: 10.1046/j.1365-294X.2001.01285.x

Gugerli, F.; Sperisen, C.; Büchler, U.; Magni, F.; Geburek, T.; Jeandroz, S.; Senn, J., 2001: Haplotype variation in a mitochondrial tandem repeat of Norway spruce (Picea abies) populations suggests a serious founder effect during postglacial re-colonization of the western Alps. Molecular Ecology, 10, 5: 1255-1263. doi: 10.1046/j.1365-294X.2001.01279.x

Sperisen, C.; Büchler, U.; Gugerli, F.; Mátyás, G.; Geburek, T.; Vendramin, G.G., 2001: Tandem repeats in plant mitochondrial genomes: application to the analysis of population differentiation in the conifer Norway spruce. Molecular Ecology, 10, 1: 257-263. doi: 10.1046/j.1365-294X.2001.01180.x

Eichenberger, K.; Gugerli, F.; Schneller, J.J., 2000: Morphological and molecular diversity of Swiss common bean cultivars (Phaseolus vulgaris L., Fabaceae). Botanica Helvetica, 110, 1: 61-77. doi: 10.5169/seals-73587

Gugerli, F., 2000: Fortpflanzung bei Saxifraga oppositifolia und S. biflora unter alpinen Bedingungen - Fremdbestäubung als genetische Versicherung?. Bauhinia, 14: 53-65.

Sperisen, C.; Gugerli, F.; Büchler, U.; Mátyás, G., 2000: Comparison of two rapid DNA extraction protocols for gymnosperms for application in popupation genetic and phylogenetic studies. Forest Genetics, 7, 2: 133-136.

Von Flüe, I.; Gugerli, F.; Holderegger, R.; Schneller, J.J., 1999: Genetic and morphological variability in alpine Saxifraga oppositifolia L. after colonization. Feddes Repertorium, 110, 7-8: 555-559. doi: 10.1002/fedr.19991100716

Gugerli, F.; Eichenberger, K.; Schneller, J.J., 1999: Promiscuity in populations of the cushion plant Saxifraga oppositifolia in the Swiss Alps as inferred from random amplified polymorphic DNA (RAPD). Molecular Ecology, 8, 3: 453-461. doi: 10.1046/j.1365-294X.1999.00586.x

Schneller, J.; Holderegger, R.; Gugerli, F.; Eichenberger, K.; Lutz, E., 1998: Patterns of genetic variation detected by RAPDs suggest a single origin with subsequent mutations and long‐distance dispersal in the apomictic fern Dryopteris remota (Dryopteridaceae) . American Journal of Botany, 85, 7: 1038-1042. doi: 10.2307/2446372

Gugerli, F., 1998: Effect of elevation on sexual reproduction in alpine populations of Saxifraga oppositifolia (Saxifragaceae). Oecologia, 114, 1: 60-66. doi: 10.1007/s004420050420

Gugerli, F.; Balkenhol, N.; Bolliger, J., 2016: Genfluss und Lebensraumzerschneidung. In: Holderegger, R.; Segelbacher, G. (eds), 2016: Naturschutzgenetik. Ein Handbuch für die Praxis. Bern, Haupt. 107-128.

Gugerli, F.; Hayes, S., 2016: EVOLTREE training activities. In: Kremer, A.; Hayes, S.; González-Martínez, S.C. (eds), 2016: Evolution of trees and forest communities: ten years of the EVOLTREE network. Bordeaux, PG Edition. 20-22.

Lefèvre, F.; Pichot, C.; Beuker, E.; Kowalczyk, J.; Matras, J.; Ziehe, M.; Villar, M.; Peter, M.; Gugerli, F.; Orazio, C.; Cordero, R.; Alia, R.; Van Halder, I.; González-Martínez, S.C.; Kremer, A., 2016: Intensive study sites. In: Kremer, A.; Hayes, S.; González-Martínez, S.C. (eds), 2016: 6-9.

Sperisen, C.; Pluess, A.R.; Arend, M.; Brang, P.; Gugerli, F.; Heiri, C., 2016: Erhaltung genetischer Ressourcen im Schweizer Wald - heutige Situation und Handlungsbedarf angesichts des Klimawandels. In: Pluess, A.R.; Augustin, S.; Brang, P.; Bundesamt für Umwelt BAFU,Bern; Eidgenössische Forschungsanstalt für Wald,Schnee und Landschaft WSL,Birmensdorf (eds), 2016: Wald im Klimawandel. Grundlagen für Adaptationsstrategien. Bern, Stuttgart, Wien, Haupt. 367-383.

Sperisen, C.; Pluess, A.R.; Arend, M.; Brang, P.; Gugerli, F.; Heiri, C., 2016: Conservation des ressources génétiques dans la forêt suisse - situation actuelle et nécessité d'agir face aux changements climatiques. In: Pluess, A.R.; Augustin, S.; Brang, P.; Office fédéral de l’environnement OFEV,Berne; Institut fédéral de recherches sur la forêt (eds), 2016: Forêts et changements climatiques. Éléments pour des stratégies d'adaptation. Berne, Stuttgart, Vienne, Haupt. 371-389.

Gugerli, F.; Frank, A.; Rellstab, C.; Pluess, A.R.; Moser, B.; Arend, M.; Sperisen, C.; Wohlgemuth, T.; Heiri, C., 2016: Variation génétique et adaptation locale des essences forestières sous le signe des changements climatiques. In: Pluess, A.R.; Augustin, S.; Brang, P.; Office fédéral de l’environnement OFEV,Berne; Institut fédéral de recherches sur la forêt, l.n.e.l.p.W.; Birmensdorf (eds), 2016: Forêts et changements climatiques. Éléments pour des stratégies d'adaptation. Berne, Stuttgart, Vienne, Haupt. 97-117.

Gugerli, F.; Frank, A.; Rellstab, C.; Pluess, A.R.; Moser, B.; Arend, M.; Sperisen, C.; Wohlgemuth, T.; Heiri, C., 2016: Genetische Variation und lokale Anpassung bei Waldbaumarten im Zeichen des Klimawandels. In: Pluess, A.R.; Augustin, S.; Brang, P.; Bundesamt für Umwelt BAFU,Bern; Eidgenössische Forschungsanstalt für Wald,Schnee und Landschaft WSL,Birmensdorf (eds), 2016: Wald im Klimawandel. Grundlagen für Adaptationsstrategien. Bern, Stuttgart, Wien, Haupt. 93-113.

Gugerli, F.; Holderegger, R.; Bolliger, M., 2015: Genetic resources. In: Rigling, A.; Schaffer, H.P. (eds), 2015: Forest report 2015. Condition and use of Swiss forests. Bern; Birmensdorf, Federal Office for the Environment FOEN; Swiss Federal Institute for Forest, Snow and Landscape Reseach WSL. 82-83.

Gugerli, F.; Holderegger, R.; Bolliger, M., 2015: Ressources génétiques. In: Rigling, A.; Schaffer, H.P. (eds), 2015: Rapport forestier 2015. État et utilisation de la forêt suisse. Berne; Birmensdorf, Office fédéral de l'environnement OFEV; institut fédéral de recherches sur la forêt, la neige et le paysage WSL. 82-83.

Gugerli, F.; Holderegger, R.; Bolliger, M., 2015: Risorse genetiche. In: Rigling, A.; Schaffer, H.P. (eds), 2015: Rapporto forestale 2015. Stato e utilizzazione del bosco svizzero. Berna; Birmensdorf, Ufficio federale dell'ambiente UFAM; istituto federale di ricerca per la foresta, la neve e il paesaggio WSL. 82-83.

Gugerli, F.; Holderegger, R.; Bolliger, M., 2015: Genetische Ressourcen. In: Rigling, A.; Schaffer, H.P. (eds), 2015: Waldbericht 2015. Zustand und Nutzung des Schweizer Waldes. Bern; Birmensdorf, Bundesamt für Umwelt BAFU; Eidg. Forschungsanstalt für Wald, Schnee und Landschaft WSL. 82-83.

Tribsch, A.; Englisch, T.; Gugerli, F.; Holderegger, R.; Niklfeld, H.; Steinmann, K.; Thiel-Egenter, C.; Zimmermann, Niklaus.E.; Taberlet, P.; IntraBioDiv Consortium, 2010: Integrating data across biodiversity levels. the project IntraBioDiv. In: Spehn, E.M.; Körner, C. (eds), 2010: Data mining for global trends in mountain biodiversity. Boca Raton, CRC Press. 89-105. doi: 10.1201/9781420083705

Gugerli, F., 2009: Können genetische Grundlagen zur nachhaltigen Waldnutzung beitragen?. In: Kräuchi, N.; Kirchner, J. (eds), 2009: Langzeitforschung für eine nachhaltige Waldnutzung. Forum für Wissen 2009, ETH Zürich, September 7, 2009. 103-109.

Holderegger, R.; Gugerli, F.; Scheidegger, C.; Taberlet, P., 2007: Integrating population genetics with landscape ecology to infer spatio-temporal processes. In: Kienast, F.; Wildi, O.; Ghosh, S. (eds), 2007: A Changing World. Challenges for Landscape Research. Dordrecht, Springer. 145-156. doi: 10.1007/978-1-4020-4436-6_10

Duelli, P.; Baur, P.; Buchecker, M.; Gugerli, F.; Holderegger, R.; Wohlgemuth, T., 2007: The role of value systems in biodiversity research. In: Kienast, F.; Wildi, O.; Ghosh, S. (eds), 2007: A Changing World. Challenges for Landscape Research. Dordrecht, Springer. 27-34. doi: 10.1007/978-1-4020-4436-6_3

Gugerli, F.; Sperisen, C.; Mátyás, G.; Senn, J.; Anzidei, M.; Vendramin, G.G., 2002: Molecular markers help to reveal post-glacial re-colonisation routes of forest tree species in the alpine region. In: Bottarin, R.; Tappeiner, U. (eds), 2002: Interdisciplinary Mountain Research. Berlin; Wien, Blackwell. 156-161.

Gugerli, F., 2001: Reaktion von Tundrapflanzen auf Klimaerwärmung - Resultate aus einem circumpolar-alpinen Grossversuch. In: Haudenschild, R. (eds), 2001: Die Polarforschung als Schlüssel zum Verständnis der globalen Veränderungen. Bern, Schweizerische Kommission für Polarforschung SKP. 31-38.

Reutimann, O.; Gugerli, F.; Rellstab, C., 2020: L'empreinte génétique, un outil d'identification de l'espèce et du taux de mélange des chênes indigènes. Forêt, 73, 5: 14-17.

Gugerli, F.; Vaupel, A.; Ellenbroek, T.; Nagel, D.; Muller, R.; Luqman, H.; Brodbeck, S.; Bolliger, J., 2017: Amphibien und Autobahnen: eine Trennungsgeschichte? Autoroutes: quels véritables effets sur les amphibiens?. Nature et Paysage. Natur und Landschaft: Inside, 26-30.

Gugerli, F.; Rellstab, C., 2017: Genetische Forschung mit Misoxer Nadelbäumen. Der Anpassung von Waldbäumen in der Val Cama auf der Spur. Terra Grischuna, 76, 1: 28-31.

Holderegger, R.; Gugerli, F.; Bolliger, J., 2016: Naturschutzgenetik für die Praxis. Génétique de la conservation pour la pratique. Nature et Paysage. Natur und Landschaft: Inside, 19.

Schmid, M.; Birrer, S.; Bolliger, J.; Csencsics, D.; Gugerli, F., 2015: Monitoring genetischer Vielfalt: Fallbeispiel Schachbrettfalter. Suivi de la diversité génétique: exemple du Demi-deuil. Nature et Paysage. Natur und Landschaft: Inside, 19-24.

Bolliger, J.; Junge, X.; Wülser, G.; Pohl, C.; Vaupel, A.; Gugerli, F.; Teilnehmende der GeneMig-Workshops, 2015: Herausforderungen und Chancen in der Zusammenarbeit Praxis-Wissenschaft – ein Erfahrungsbericht. Défis et opportunités de la collaboration entre science et pratique: compte rendu d'expérience. Nature et Paysage. Natur und Landschaft: Inside, 24-28.

Holderegger, R.; Bolliger, M.; Gugerli, F., 2015: Wie weit fliegen Pollenkörner?. Wald und Holz, 31-33.

Holderegger, R.; Bolliger, M.; Gugerli, F., 2015: Jusqu'où les grains de pollen s'envolent-ils?. Forêt, 68, 2: 17-19.

Frei, M.; Csencsics, D.; Bühler, C.; Gugerli, F.; Bolliger, J., 2014: Wie gut sind Vorkommen der Kreuzkröte in einer landwirtschaftlich geprägten Landschaft vernetzt? – Interconnexion des populations de crapauds calamites dans le paysage agricole. Nature et Paysage. Natur und Landschaft: Inside, 16-20.

Bolliger, J.; Junge, X.; Vaupel, A.; Gugerli, F., 2013: Wissenschaft und Praxis im Dialog über Landschaftsgenetik. Science et pratique dans la génétique du paysage. Nature et Paysage. Natur und Landschaft: Inside, 16-19.

Gugerli, F.; Zimmermann, N.E.; Holderegger, R., 2013: Genetische Vielfalt. Die Alpen als Barriere und Schmelztiegel. Hotspot, 12-13.

Brodbeck, S.; Cioldi, F.; Gugerli, F., 2013: Recherche génétique de traces dans l'arolière. Forêt, 15-19.

Brodbeck, S.; Cioldi, F.; Gugerli, F., 2012: Ausbreitung und Fortpflanzung der Arve: Genetische Spurensuche im Arvenwald. Wald und Holz, 93, 5: 31-34.

Hepenstrick, D.; Gugerli, F.; Holderegger, R.; Senn, J.; Gremminger, T.; Thiel, D., 2010: Fragmentierung in einem Wildtierkorridor von nationaler Bedeutung. Fragmentation dans un couloir faunistique d'importance nationale. Nature et Paysage. Natur und Landschaft: Inside, 21-23.

Brodbeck, S.; Gugerli, F., 2010: Sombre sentinelle des chemins - un roi dans les Alpes. Alpen, 32-37.

Brodbeck, S.; Gugerli, F., 2010: Eine faszinierende Wegbegleiterin: Die Arve - Königin der Alpen. Alpen, 32-37.

Hilfiker, K.; Gugerli, F.; Holderegger, R., 2009: Ist das Geschlechterverhältnis der Eibe von praktischer Bedeutung?. Eibenfreund, 74-77.

Gugerli, F.; Jacob, G.; Bollmann, K., 2008: Molekulare Marker erzählen aus dem Geschichtenbuch: Auerhuhn-Populationsgenetik in den Schweizer Alpen. Ornithologischer Beobachter, 105, 1: 77-84.

Holderegger, R.; Gugerli, F., 2006: Moderne Forschung ist auf Sammlungen angewiesen. Hotspot, 13.

Wirth, L.R.; Hoebee, S.E.; Arnold, U.; Düggelin, C.; Brodbeck, S.; Rotach, P.; Gugerli, F.; Holderegger, R., 2005: Ausbreitung der Elsbeerpollen. Destination unbekannt?. Corminaria, 3-5.

Gugerli, F.; Brodbeck, S.; Holderegger, R., 2005: Die unerträgliche Leichtigkeit, eine reine Eiche zu sein. Blattmorphologie und genetischer Fingerabdruck als unterschiedlich einsetzbare Bestimmungshilfen. Informationsblatt Landschaft, 63: 1-5.

Gugerli, F., 2005: Les fleurs des Alpes sont plus volages qu'on ne le croit. Alpen, 22-26.

Gugerli, F., 2005: Fortpflanzung bei Steinbrech & Co. Auch Alpenpflanzen gehen fremd. Alpen, 81, 6: 22-26.

Wirth, L.R.; Angelone, S.; Hoebee, S.E.; Arnold, U.; Düggelin, C.; Hilfiker, K.; Brodbeck, S.; Gugerli, F.; Holderegger, R., 2005: Die Elsbeere (Sorbus torminalis). Fruchtbarkeit trotz Einsamkeit. Wald und Holz, 86, 2: 33-35.

Hilfiker, K.; Ulber, M.; Gugerli, F.; Rotach, P.; Bonfils, P.; Holderegger, R., 2004: Comment promouvoir et régénérer l'if en Suisse?. Forêt, 57, 1: 11-13.

Ulber, M.; Gugerli, F.; Bozic, G., 2004: Technical guidlines for genetic conservation and use for Swiss stone pine (Pinus cembra). 6 p.

Hilfiker, K.; Ulber, M.; Gugerli, F.; Rotach, P.; Bonfils, P.; Holderegger, R., 2003: In kleinen Eibenpopulationen: Mehr Weibchen als Männchen. Wald und Holz, 84, 2: 44-46.

Holderegger, R.; Arnold, U.; Bonfils, P.; Dounavi, A.; Finkeldey, R.; Gugerli, F.; Hilfiker, K.; Hoebee, S.; Rotach, P.; Studhalter, S.; Ulber, M., 2002: WSL-Forschungsprojekte zu seltenen Baumarten in der Abteilung Genetische Ökologie, insbesondere der Elsbeere. Corminaria, 11.

Gugerli, F., 1998: Grössere Konkurrenz in der arktischen Flora. Kurzfristig verstärktes Wachstum bei Temperaturerhöhung. Neue Zürcher Zeitung, 69 (2 pp.).