Rendre visibles les relations cachées: diversité génétique et génétique de la conservation
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La capacité des différentes espèces animales et végétales à bien s’adapter à leur environnement dépend de leur diversité génétique. Nous étudions les processus écologiques dans les populations de champignons, de lichens, de plantes et d’animaux à l’aide de méthodes de génétique moléculaire et de recherches expérimentales.
Comment les plantes alpines s’adaptent-elles aux conditions environnementales changeantes? De quelle façon les routes, les corridors écologiques et d’autres éléments du paysage influencent-ils l'expansion et l’interconnexion des populations? Comment les processus biodémographiques tels que la consanguinité affectent-ils la présence d’espèces rares? Et combien d’animaux vivent en un lieu donné?
Les réponses à ces questions peuvent être cachées dans les gènes des espèces concernées. À l’aide de méthodes de génétique moléculaire et d’expériences, par exemple en serre, nous étudions les processus écologiques dans les populations végétales et animales, déterminons les espèces à l’aide de séquences d’ADN et mettons en évidence l’existence d’espèces dans des échantillons environnementaux. Lors de nos expériences, nous nous concentrons sur des espèces qui jouent un rôle écosystémique essentiel, qui ont leur centre de répartition en Suisse, ou sont rares ou en danger, comme les arolles et les rainettes. Nos résultats constituent des bases essentielles pour la planification et la mise en œuvre de mesures de protection de la nature et des espèces, mais également pour la sylviculture.
Thèmes
POUR EN SAVOIR PLUS
News
20.06.2019
16.05.2019
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Contact
Prof. Dr. Rolf Holderegger
chef d'unité de recherche, membre du Conseil de direction
Dr. Felix Gugerli Künzle
senior scientist, vice-chef de groupe
PD Dr. Janine Bolliger
collaboratrice scientifique
Dr. Christian Rellstab
collaborateur scientifique
Prof. Dr. Christoph Scheidegger
chef de groupe, senior scientist
Services et produits
Contrôle des mesures de mise en réseau
Responsable:
Rolf Holderegger
Lecture: Landscape Genetics
Organisateur/trice:
ETH Zürich
(Nouvelles) publications
Der neu entwickelte Werkzeugkasten Naturschutzgenetik bietet der Naturschutzpraxis Workflows an, welche es erlauben genetische Methoden im Naturschutz routinemässig einzusetzen. Hauptbestandteil des Werkzeugkastens sind einfache Workflows mit Anleitungen für das Probenahmedesign, das Sammeln von Proben, die Analysen im Labor, Auswertungen sowie Resultate und deren Interpretation.
WSL Berichte 81
2019
Télécharger
Unsere Ergebnisse aus der Umfrage zeigen, dass Fachleute im Naturschutz eine grosse Vielfalt an Informationsquellen nutzen. Der Bericht zeigt Handlungsmöglichkeiten auf, um den Austausch zwischen Wissenschaft und Praxis im Naturschutz effektiver zu gestalten.
WSL Berichte 62
2018
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Avanzi, C.; Piermattei, A.; Piotti, A.; Büntgen, U.; Heer, K.; Opgenoorth, L.; Spanu, I.; Urbinati, C.; Vendramin, G.G.; Leonardi, S., 2019: Disentangling the effects of spatial proximity and genetic similarity on individual growth performances in Norway spruce natural populations. Science of the Total Environment, 650: 493-504. doi: 10.1016/j.scitotenv.2018.08.348
Djukic, I.; Kepfer-Rojas, S.; Schmidt, I.K.; Larsen, K.S.; Beier, C.; Berg, B.; Verheyen, K.; Caliman, A.; Paquette, A.; Gutiérrez-Girón, A.; Humber, A.; Valdecantos, A.; Petraglia, A.; Alexander, H.; Augustaitis, A.; Saillard, A.; Fernández, A.C.R.; Sousa, A.I.; Lillebø, A.I.; ... Tóth, Z., 2018: Early stage litter decomposition across biomes. Science of the Total Environment, 628-629: 1369-1394. doi: 10.1016/j.scitotenv.2018.01.012
Milanesi, P.; Caniglia, R.; Fabbri, E.; Puopolo, F.; Galaverni, M.; Holderegger, R., 2018: Combining Bayesian genetic clustering and ecological niche modeling: insights into wolf intraspecific genetic structure. Ecology and Evolution, 8, 22: 11224-11234. doi: 10.1002/ece3.4594
DiLeo, M.F.; Holderegger, R.; Wagner, H.H., 2018: Contemporary pollen flow as a multiscale process: evidence from the insect‐pollinated herb, Pulsatilla vulgaris. Journal of Ecology, 106, 6: 2242-2255. doi: 10.1111/1365-2745.12992
Halbritter, A.H.; Fior, S.; Keller, I.; Billeter, R.; Edwards, P.J.; Holderegger, R.; Karrenberg, S.; Pluess, A.R.; Widmer, A.; Alexander, J.M., 2018: Trait differentiation and adaptation of plants along elevation gradients. Journal of Evolutionary Biology, 31, 6: 784-800. doi: 10.1111/jeb.13262
Rogivue, A.; Graf, R.; Parisod, C.; Holderegger, R.; Gugerli, F., 2018: The phylogeographic structure of Arabis alpina in the Alps shows consistent patterns across different types of molecular markers and geographic scales. Alpine Botany, 128, 1: 35-45. doi: 10.1007/s00035-017-0196-8
Fischer, M.C.; Rellstab, C.; Leuzinger, M.; Roumet, M.; Gugerli, F.; Shimizu, K.K.; Holderegger, R.; Widmer, A., 2017: Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri. BMC Genomics, 18: 69 (15 pp.). doi: 10.1186/s12864-016-3459-7
Rellstab, C.; Fischer, M.C.; Zoller, S.; Graf, R.; Tedder, A.; Shimizu, K.K.; Widmer, A.; Holderegger, R.; Gugerli, F., 2017: Local adaptation (mostly) remains local: reassessing environmental associations of climate-related candidate SNPs in Arabidopsis halleri. Heredity, 118, 2: 193-201. doi: 10.1038/hdy.2016.82
Klopfenstein, N.B.; Stewart, J.E.; Ota, Y.; Hanna, J.W.; Richardson, B.A.; Ross-Davis, A.L.; Elías-Román, R.D.; Korhonen, K.; Keča, N.; Iturritxa, E.; Alvarado-Rosales, D.; Solheim, H.; Brazee, N.J.; Łakomy, P.; Cleary, M.R.; Hasegawa, E.; Kikuchi, T.; Garza-Ocañas, F.; Tsopelas, P.; ... Kim, M., 2017: Insights into the phylogeny of Northern Hemisphere Armillaria: neighbor-net and Bayesian analyses of translation elongation factor 1-α gene sequences. Mycologia, 109, 1: 75-91. doi: 10.1080/00275514.2017.1286572
Tsykun, T.; Rellstab, C.; Dutech, C.; Sipos, G.; Prospero, S., 2017: Comparative assessment of SSR and SNP markers for inferring the population genetic structure of the common fungus Armillaria cepistipes. Heredity, 119, 5: 371-380. doi: 10.1038/hdy.2017.48
Schmid, S.; Genevest, R.; Gobet, E.; Suchan, T.; Sperisen, C.; Tinner, W.; Alvarez, N., 2017: HyRAD-X, a versatile method combining exome capture and RAD sequencing to extract genomic information from ancient DNA. Methods in Ecology and Evolution, 8, 10: 1374-1388. doi: 10.1111/2041-210X.12785
Trapiello, E.; Schoebel, C.N.; Rigling, D., 2017: Fungal community in symptomatic ash leaves in Spain. Baltic Forestry, 23, 1: 68-73.
Milanesi, P.; Breiner, F.T.; Puopolo, F.; Holderegger, R., 2017: European human-dominated landscapes provide ample space for the recolonization of large carnivore populations under future land change scenarios. Ecography, 40, 12: 1359-1368. doi: 10.1111/ecog.02223
Rellstab, C.; Fischer, M.C.; Csencsics, D.; Gugerli, F.; Holderegger, R., 2017: Bedeutung der lokalen Anpassung in der Naturschutzgenetik. In: Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 31-37.
Hartmann, M.; Sperisen, C., 2017: Der Boden – eine wertvolle Ressource für die genetische Vielfalt. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 39-47.
Bolliger, J.; Gugerli, F., 2017: Isoliert oder vernetzt? Auswirkungen der Landschaft auf den Genfluss. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 23-29.
Thiel-Egenter, C., 2017: Naturschutzgenetik aus Ökobürosicht – Chancen und Erfahrungen. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 71-76.
Schmidt, B.R.; Grünig, C.R., 2017: Einsatz von eDNA im Amphibien-Monitoring. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 57-62.
Meier, R.; Stapfer, A., 2017: Werkzeugkasten für genetische Methoden in der Biodiversitätsförderung. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 49-56.
Cordillot, F., 2017: Bedeutung der Naturschutzgenetik für den Bund. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 63-69.
Bühler, C.; Dubey, S., 2017: Application de la génétique de la conservation dans les bureaux d’études en écologie. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 77-82.
Biebach, I.; Keller, L., 2017: Inzucht und ihre Bedeutung für den Naturschutz. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 15-22.
Frank, A.; Pluess, A.R.; Howe, G.T.; Sperisen, C.; Heiri, C., 2017: Quantitative genetic differentiation and phenotypic plasticity of European beech in a heterogeneous landscape: indications for past climate adaptation. Perspectives in Plant Ecology, Evolution and Systematics, 26: 1-13. doi: 10.1016/j.ppees.2017.02.001
Frank, A.; Sperisen, C.; Howe, G.T.; Brang, P.; Walthert, L.; St.Clair, J.B.; Heiri, C., 2017: Distinct genecological patterns in seedlings of Norway spruce and silver fir from a mountainous landscape. Ecology, 98, 1: 211-227. doi: 10.1002/ecy.1632
Milanesi, P.; Holderegger, R.; Bollmann, K.; Gugerli, F.; Zellweger, F., 2017: Three-dimensional habitat structure and landscape genetics: a step forward in estimating functional connectivity. Ecology, 98, 2: 393-402. doi: 10.1002/ecy.1645
Schoebel, C.N.; Botella, L.; Lygis, V.; Rigling, D., 2017: Population genetic analysis of a parasitic mycovirus to infer the invasion history of its fungal host. Molecular Ecology, 26, 9: 2482-2497. doi: 10.1111/mec.14048
Lygis, V.; Prospero, S.; Burokiene, D.; Schoebel, C.N.; Marciulyniene, D.; Norkute, G.; Rigling, D., 2017: Virulence of the invasive ash pathogen Hymenoscyphus fraxineus in old and recently established populations. Plant Pathology, 66, 5: 783-791. doi: 10.1111/ppa.12635
Braaker, S.; Kormann, U.; Bontadina, F.; Obrist, M.K., 2017: Prediction of genetic connectivity in urban ecosystems by combining detailed movement data, genetic data and multi-path modelling. Landscape and Urban Planning, 160: 107-114. doi: 10.1016/j.landurbplan.2016.12.011
Serra-Varela, M.J.; Alía, R.; Ruiz Daniels, R.; Zimmermann, N.E.; Gonzalo-Jiménez, J.; Grivet, D., 2017: Assessing vulnerability of two Mediterranean conifers to support genetic conservation management in the face of climate change. Diversity and Distributions, 23, 5: 507-516. doi: 10.1111/ddi.12544
Milanesi, P.; Holderegger, R.; Caniglia, R.; Fabbri, E.; Galaverni, M.; Randi, E., 2017: Expert-based versus habitat-suitability models to develop resistance surfaces in landscape genetics. Oecologia, 183, 1: 67-79. doi: 10.1007/s00442-016-3751-x
Fournier, B.; Mouly, A.; Moretti, M.; Gillet, F., 2017: Contrasting processes drive alpha and beta taxonomic, functional and phylogenetic diversity of orthopteran communities in grasslands. Agriculture, Ecosystems and Environment, 242: 43-52. doi: 10.1016/j.agee.2017.03.021
Peter, M.; Kohler, A.; Ohm, R.A.; Kuo, A.; Krützmann, J.; Morin, E.; Arend, M.; Barry, K.W.; Binder, M.; Choi, C.; Clum, A.; Copeland, A.; Grisel, N.; Haridas, S.; Kipfer, T.; LaButti, K.; Lindquist, E.; Lipzen, A.; Maire, R.; ... Martin, F.M., 2016: Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum. Nature Communications, 7: 12662 (15 pp.). doi: 10.1038/ncomms12662
Chala, D.; Brochmann, C.; Psomas, A.; Ehrich, D.; Gizaw, A.; Masao, C.A.; Bakkestuen, V.; Zimmermann, N.E., 2016: Good-bye to tropical alpine plant giants under warmer climates? Loss of range and genetic diversity in Lobelia rhynchopetalum. Ecology and Evolution, 6, 24: 8931-8941. doi: 10.1002/ece3.2603
Rellstab, C.; Pluess, A.R.; Gugerli, F., 2016: Lokale Anpassung bei Waldbaumarten: genetische Prozesse und Bedeutung im Klimawandel. Schweizerische Zeitschrift für Forstwesen, 167, 6: 333-340. doi: 10.3188/szf.2016.0333
Holderegger, R., 2016: Vielfältige Anwendungen genetischer Methoden im Wald. Schweizerische Zeitschrift für Forstwesen, 167, 6: 308-315. doi: 10.3188/szf.2016.0308
Keller, C.; Scheidegger, C., 2016: Multiple mating events and spermatia-mediated gene flow in the lichen-forming fungus Lobaria pulmonaria. Herzogia, 29, 2: 435-450. doi: 10.13158/heia.29.2.2016.435
Tsuda, Y.; Chen, J.; Stocks, M.; Källman, T.; Sønstebø, J.H.; Parducci, L.; Semerikov, V.; Sperisen, C.; Politov, D.; Ronkainen, T.; Väliranta, M.; Vendramin, G.G.; Tollefsrud, M.M.; Lascoux, M., 2016: The extent and meaning of hybridization and introgression between Siberian spruce (Picea obovata) and Norway spruce (Picea abies): cryptic refugia as stepping stones to the west?. Molecular Ecology, 25, 12: 2773-2789. doi: 10.1111/mec.13654
Schmid, M.; Csencsics, D.; Gugerli, F., 2016: Repetitive flanking sequences challenge microsatellite marker development: a case study in the lepidopteran Melanargia galathea. Molecular Ecology Resources, 16, 6: 1499-1507. doi: 10.1111/1755-0998.12547
Rellstab, C.; Bühler, A.; Graf, R.; Folly, C.; Gugerli, F., 2016: Using joint multivariate analyses of leaf morphology and molecular-genetic markers for taxon identification in three hybridizing European white oak species (Quercus spp.). Annals of Forest Science, 73, 3: 669-679. doi: 10.1007/s13595-016-0552-7
Rellstab, C.; Zoller, S.; Walthert, L.; Lesur, I.; Pluess, A.R.; Graf, R.; Bodénès, C.; Sperisen, C.; Kremer, A.; Gugerli, F., 2016: Signatures of local adaptation in candidate genes of oaks (Quercus spp.) with respect to present and future climatic conditions. Molecular Ecology, 25, 23: 5907-5924. doi: 10.1111/mec.13889
Rehnus, M.; Bollmann, K., 2016: Non-invasive genetic population density estimation of mountain hares (Lepus timidus) in the Alps: systematic or opportunistic sampling?. European Journal of Wildlife Research, 62, 6: 737-747. doi: 10.1007/s10344-016-1053-6
Mosca, E.; Gugerli, F.; Eckert, A.J.; Neale, D.B., 2016: Signatures of natural selection on Pinus cembra and P. mugo along elevational gradients in the Alps. Tree Genetics and Genomes, 12, 1: 9 (15 pp.). doi: 10.1007/s11295-015-0964-9
Milanesi, P.; Holderegger, R.; Caniglia, R.; Fabbri, E.; Randi, E., 2016: Different habitat suitability models yield different least-cost path distances for landscape genetic analysis. Basic and Applied Ecology, 17, 1: 61-71. doi: 10.1016/j.baae.2015.08.008
Mark, K.; Cornejo, C.; Keller, C.; Flück, D.; Scheidegger, C., 2016: Barcoding lichen-forming fungi using 454 pyrosequencing is challenged by artifactual and biological sequence variation. Genome, 59, 9: 685-704. doi: 10.1139/gen-2015-0189
Frei, M.; Csencsics, D.; Brodbeck, S.; Schweizer, E.; Bühler, C.; Gugerli, F.; Bolliger, J., 2016: Combining landscape genetics, radio-tracking and long-term monitoring to derive management implications for Natterjack toads (Epidalea calamita) in agricultural landscapes. Journal for Nature Conservation, 32: 22-34. doi: 10.1016/j.jnc.2016.04.002
Burkart, S.; Gugerli, F.; Senn, J.; Kuehn, R.; Bolliger, J., 2016: Evaluating the functionality of expert-assessed wildlife corridors with genetic data from roe deer. Basic and Applied Ecology, 17, 1: 52-60. doi: 10.1016/j.baae.2015.09.001
Degtjarenko, P.; Marmor, L.; Tõrra, T.; Lerch, M.; Saag, A.; Randlane, T.; Scheidegger, C., 2016: Impact of alkaline dust pollution on genetic variation of Usnea subfloridana populations. Fungal Biology, 120, 10: 1165-1174. doi: 10.1016/j.funbio.2016.05.010
Dutech, C.; Prospero, S.; Heinzelmann, R.; Fabreguettes, O.; Feau, N., 2016: Rapid identification of polymorphic sequences in non-model fungal species: the PHYLORPH method tested in Armillaria species. Forest Pathology, 46, 4: 298-308. doi: 10.1111/efp.12256
Csencsics, D.; Holderegger, R., 2016: Origin of natural regeneration of black poplar (Populus nigra L.) and co-occurrence with hybrid poplar offspring. Flora, 222: 20-26. doi: 10.1016/j.flora.2016.03.009
DiLeo, M.F.; Graf, R.; Holderegger, R.; Rico, Y.; Wagner, H.H., 2015: Highly polymorphic microsatellite markers in Pulsatilla vulgaris (Ranunculaceae) using next-generation sequencing. Applications in Plant Sciences, 3, 7: 1500031 (3 pp.). doi: 10.3732/apps.1500031
Van Strien, M.J.; Holderegger, R.; Van Heck, H.J., 2015: Isolation-by-distance in landscapes: considerations for landscape genetics. Heredity, 114, 1: 27-37. doi: 10.1038/hdy.2014.62
Stockenhuber, R.; Zoller, S.; Shimizu-Inatsugi, R.; Gugerli, F.; Shimizu, K.K.; Widmer, A.; Fischer, M.C., 2015: Efficient detection of novel nuclear markers for Brassicaceae by transcriptome sequencing. PLoS One, 10, 6: e0128181 (19 pp.). doi: 10.1371/journal.pone.0128181
Rellstab, C.; Gugerli, F.; Eckert, A.J.; Hancock, A.M.; Holderegger, R., 2015: A practical guide to environmental association analysis in landscape genomics. Molecular Ecology, 24, 17: 4348-4370. doi: 10.1111/mec.13322
Burokiene, D.; Prospero, S.; Jung, E.; Marciulyniene, D.; Moosbrugger, K.; Norkute, G.; Rigling, D.; Lygis, V.; Schoebel, C.N., 2015: Genetic population structure of the invasive ash dieback pathogen Hymenoscyphus fraxineus in its expanding range. Biological Invasions, 17, 9: 2743-2756. doi: 10.1007/s10530-015-0911-6
Le Lay, G.; Angelone, S.; Holderegger, R.; Flory, C.; Bolliger, J., 2015: Increasing pond density to maintain a patchy habitat network of the European Treefrog (Hyla arborea). Journal of Herpetology, 49, 2: 217-221. doi: 10.1670/13-056
Keller, D.; Holderegger, R.; Van Strien, M.J.; Bolliger, J., 2015: How to make landscape genetics beneficial for conservation management?. Conservation Genetics, 16, 3: 503-512. doi: 10.1007/s10592-014-0684-y
Schoebel, C.N.; Stewart, J.; Gruenwald, N.J.; Rigling, D.; Prospero, S., 2014: Population history and pathways of spread of the plant pathogen Phytophthora plurivora. PLoS One, 9, 1: e85368 (11 pp.). doi: 10.1371/journal.pone.0085368
Aavik, T.; Holderegger, R.; Bolliger, J., 2014: The structural and functional connectivity of the grassland plant Lychnis flos-cuculi. Heredity, 112, 5: 471-478. doi: 10.1038/hdy.2013.120
Gerber, S.; Chadœuf, J.; Gugerli, F.; Lascoux, M.; Buiteveld, J.; Cottrell, J.; Dounavi, A.; Fineschi, S.; Forrest, L.L.; Fogelqvist, J.; Goicoechea, P.G.; Svejgaard Jensen, J.; Salvini, D.; Vendramin, G.G.; Kremer, A., 2014: High rates of gene flow by pollen and seed in oak populations across Europe. PLoS One, 9, 1: e85130 (16 pp.). doi: 10.1371/journal.pone.0085130
Keller, I.; Alexander, J.M.; Edwards, P.J.; Holderegger, R., 2014: Lokale Anpassungen an verschiedene Höhenlagen. Natur und Landschaft, 89, 4: 145-150. doi: 10.17433/4.2014.50153265.145-150
Buehler, D.; Holderegger, R.; Brodbeck, S.; Schnyder, E.; Gugerli, F., 2014: Validation of outlier loci through replication in independent data sets: a test on Arabis alpina. Ecology and Evolution, 4, 22: 4296-4306. doi: 10.1002/ece3.1300
Van Strien, M.J.; Keller, D.; Holderegger, R.; Ghazoul, J.; Kienast, F.; Bolliger, J., 2014: Landscape genetics as a tool for conservation planning: predicting the effects of landscape change on gene flow. Ecological Applications, 24, 2: 327-339. doi: 10.1890/13-0442.1
Schoebel, C.N.; Zoller, S.; Rigling, D., 2014: Detection and genetic characterisation of a novel mycovirus in Hymenoscyphus fraxineus, the causal agent of ash dieback. Infection, Genetics and Evolution, 28: 78-86. doi: 10.1016/j.meegid.2014.09.001
Rico, Y.; Holderegger, R.; Boehmer, H.J.; Wagner, H.H., 2014: Directed dispersal by rotational shepherding supports landscape genetic connectivity in a calcareous grassland plant. Molecular Ecology, 23, 4: 832-842. doi: 10.1111/mec.12639
Lendvay, B.; Höhn, M.; Brodbeck, S.; Mîndrescu, M.; Gugerli, F., 2014: Genetic structure in Pinus cembra from the Carpathian Mountains inferred from nuclear and chloroplast microsatellites confirms post-glacial range contraction and identifies introduced individuals. Tree Genetics and Genomes, 10, 5: 1419-1433. doi: 10.1007/s11295-014-0770-9
Aavik, T.; Bosshard, D.; Edwards, P.J.; Holderegger, R.; Billeter, R., 2014: Fitness in naturally occurring and restored populations of a grassland plant lychnis flos-cuculiy in a Swiss agricultural landscape. Restoration Ecology, 22, 1: 98-106. doi: 10.1111/rec.12020
King, G.M.; Gugerli, F.; Fonti, P.; Frank, D.C., 2013: Tree growth response along an elevational gradient: climate or genetics?. Oecologia, 173, 4: 1587-1600. doi: 10.1007/s00442-013-2696-6
Rellstab, C.; Zoller, S.; Tedder, A.; Gugerli, F.; Fischer, M.C., 2013: Validation of SNP allele frequencies determined by pooled next-generation sequencing in natural populations of a non-model plant species. PLoS One, 8, 11: e80422 (10 pp.). doi: 10.1371/journal.pone.0080422
Buehler, D.; Poncet, B.N.; Holderegger, R.; Manel, S.; Taberlet, P.; Gugerli, F., 2013: An outlier locus relevant in habitat-mediated selection in an alpine plant across independent regional replicates. Evolutionary Ecology, 27, 2: 285-300. doi: 10.1007/s10682-012-9597-8
Schoebel, C.N.; Brodbeck, S.; Buehler, D.; Cornejo, C.; Gajurel, J.; Hartikainen, H.; Keller, D.; Leys, M.; Říčanová, Š.; Segelbacher, G.; Werth, S.; Csencsics, D., 2013: Lessons learned from microsatellite development for nonmodel organisms using 454 pyrosequencing. Journal of Evolutionary Biology, 26, 3: 600-611. doi: 10.1111/jeb.12077
Seymour, M.; Räsänen, K.; Holderegger, R.; Kristjánsson, B.K., 2013: Connectivity in a pond system influences migration and genetic structure in threespine stickleback. Ecology and Evolution, 3, 3: 492-502. doi: 10.1002/ece3.476
Fischer, M.C.; Rellstab, C.; Tedder, A.; Zoller, S.; Gugerli, F.; Shimizu, K.K.; Holderegger, R.; Widmer, A., 2013: Population genomic footprints of selection and associations with climate in natural populations of Arabidopsis halleri from the Alps. Molecular Ecology, 22, 22: 5594-5607. doi: 10.1111/mec.12521
Walzer, C.; Kowalczyk, C.; Alexander, J.M.; Baur, B.; Bogliani, G.; Brun, J.; Füreder, L.; Guth, M.; Haller, R.; Holderegger, R.; Kohler, Y.; Kueffer, C.; Righetti, A.; Spaar, R.; Sutherland, W.J.; Ullrich-Schneider, A.; Vanpeene-Bruhier, S.N.; Scheurer, T., 2013: The 50 most important questions relating to the maintenance and restoration of an ecological continuum in the European Alps. PLoS One, 8, 1: e53139 (11 pp.). doi: 10.1371/journal.pone.0053139
Zulliger, D.; Schnyder, E.; Gugerli, F., 2013: Are adaptive loci transferable across genomes of related species? Outlier and environmental association analyses in Alpine Brassicaceae species. Molecular Ecology, 22, 6: 1626-1639. doi: 10.1111/mec.12199
Winkler, M.; Tribsch, A.; Schneeweiss, G.M.; Brodbeck, S.; Gugerli, F.; Holderegger, R.; Schönswetter, P., 2013: Strong nuclear differentiation contrasts with widespread sharing of plastid DNA haplotypes across taxa in European purple saxifrages (Saxifraga section Porphyrion subsection Oppositifoliae). Botanical Journal of the Linnean Society, 173, 4: 622-636. doi: 10.1111/boj.12104
Steinbrecher, R.; Contran, N.; Gugerli, F.; Schnitzler, J.-P.; Zimmer, I.; Menard, T.; Günthardt-Goerg, M.S., 2013: Inter- and intra-specific variability in isoprene production and photosynthesis of Central European oak species. Plant Biology, 15, Suppl. 1: 148-156. doi: 10.1111/j.1438-8677.2012.00688.x
Manel, S.; Holderegger, R., 2013: Ten years of landscape genetics. Trends in Ecology and Evolution, 28, 10: 614-621. doi: 10.1016/j.tree.2013.05.012
Maag, N.; Karpati, T.; Bollmann, K., 2013: Semi-natural river system maintains functional connectivity and gene flow of the critically endangered gravel grasshopper (Chorthippus pullus). Biological Conservation, 158: 88-97. doi: 10.1016/j.biocon.2012.08.015
Keller, I.; Alexander, J.M.; Holderegger, R.; Edwards, P.J., 2013: Widespread phenotypic and genetic divergence along altitudinal gradients in animals. Journal of Evolutionary Biology, 26, 12: 2527-2543. doi: 10.1111/jeb.12255
Keller, D.; Holderegger, R.; Van Strien, M.J., 2013: Spatial scale affects landscape genetic analysis of a wetland grasshopper. Molecular Ecology, 22, 9: 2467-2482. doi: 10.1111/mec.12265
Keller, D.; Van Strien, M.J.; Herrmann, M.; Bolliger, J.; Edwards, P.J.; Ghazoul, J.; Holderegger, R., 2013: Is functional connectivity in common grasshopper species affected by fragmentation in an agricultural landscape?. Agriculture, Ecosystems and Environment, 175: 39-46. doi: 10.1016/j.agee.2013.05.006
Keller, D.; Holderegger, R., 2013: Damselflies use different movement strategies for short- and long-distance dispersal. Insect Conservation and Diversity, 6, 5: 590-597. doi: 10.1111/icad.12016
Herrmann, M.; Holderegger, R.; Van Strien, M.J., 2013: Influence of parameter settings in automated scoring of AFLPs on population genetic analysis. Molecular Ecology Resources, 13, 1: 128-134. doi: 10.1111/1755-0998.12033
Gugerli, F.; Brandl, R.; Castagneyrol, B.; Franc, A.; Jactel, H.; Koelewijn, H.; Martin, F.; Peter, M.; Pritsch, K.; Schröder, H.; Smulders, M.J.M.; Kremer, A.; Ziegenhagen, B.; Evoltree JERA3 contributors, 2013: Community genetics in the time of next-generation molecular technologies. Molecular Ecology, 22, 12: 3198-3207. doi: 10.1111/mec.12300
Butterfield, B.J.; Cavieres, L.A.; Callaway, R.M.; Cook, B.J.; Kikvidze, Z.; Lortie, C.J.; Michalet, R.; Pugnaire, F.I.; Schöb, C.; Xiao, S.; Zaitchek, B.; Anthelme, F.; Björk, R.G.; Dickinson, K.; Gavilán, R.; Kanka, R.; Maalouf, J.-P.; Noroozi, J.; Parajuli, R.; ... Brooker, R.W., 2013: Alpine cushion plants inhibit the loss of phylogenetic diversity in severe environments. Ecology Letters, 16, 4: 478-486. doi: 10.1111/ele.12070
Bothwell, H.; Bisbing, S.; Therkildsen, N.O.; Crawford, L.; Alvarez, N.; Holderegger, R.; Manel, S., 2013: Identifying genetic signatures of selection in a non-model species, alpine gentian (Gentiana nivalis L.), using a landscape genetic approach. Conservation Genetics, 14, 2: 467-481. doi: 10.1007/s10592-012-0411-5
Aavik, T.; Holderegger, R.; Edwards, P.J.; Billeter, R., 2013: Patterns of contemporary gene flow suggest low functional connectivity of grasslands in a fragmented agricultural landscape. Journal of Applied Ecology, 50, 2: 395-403. doi: 10.1111/1365-2664.12053
Schoebel, C.N.; Jung, E.; Prospero, S., 2013: Development of new polymorphic microsatellite markers for three closely related plant-pathogenic Phytophthora species using 454-pyrosequencing and their potential application. Phytopathology, 103, 10: 1020-1027. doi: 10.1094/PHYTO-01-13-0026-R
Keller, D.; Seidl, I.; Forrer, C.; Home, R.; Holderegger, R., 2013: Schutz der Helm-Azurjungfer Coenagrion mercuriale (Odonata: Coenagrionidae) am Beispiel des Smaragd-Gebiets Oberaargau. Entomo Helvetica, 6: 87-99.
Salzer, K.; Gugerli, F., 2012: Reduced fitness at early life stages in peripheral versus core populations of Swiss stone pine (Pinus cembra) is not reflected by levels of inbreeding in seed families. Alpine Botany, 122, 2: 75-85. doi: 10.1007/s00035-012-0106-z
Zumsteg, A.; Luster, J.; Göransson, H.; Smittenberg, R.H.; Brunner, I.; Bernasconi, S.M.; Zeyer, J.; Frey, B., 2012: Bacterial, archaeal and fungal succession in the forefield of a receding glacier. Microbial Ecology, 63, 3: 552-564. doi: 10.1007/s00248-011-9991-8
Keller, D.; Jung, E.; Holderegger, R., 2012: Development of microsatellite markers for the wetland grasshopper Stethophyma grossum. Conservation Genetics Resources, 4, 2: 507-509. doi: 10.1007/s12686-011-9586-1
Wagner, H.H.; Murphy, M.A.; Holderegger, R.; Waits, L., 2012: Developing an interdisciplinary, distributed graduate course for twenty-first century scientists. BioScience, 62, 2: 182-188. doi: 10.1525/bio.2012.62.2.11
Buehler, D.; Graf, R.; Holderegger, R.; Gugerli, F., 2012: Contemporary gene flow and mating system of Arabis alpina in a Central European alpine landscape. Annals of Botany, 109, 7: 1359-1367. doi: 10.1093/aob/mcs066
Hoebee, S.E.; Angelone, S.; Csencsics, D.; Määttänen, K.; Holderegger, R., 2012: Diversity of S-alleles and mate availability in 3 populations of self-incompatible wild pear (Pyrus pyraster). Journal of Heredity, 103, 2: 260-267. doi: 10.1093/jhered/esr126
Van Strien, M.J.; Keller, D.; Holderegger, R., 2012: A new analytical approach to landscape genetic modelling: least-cost transect analysis and linear mixed models. Molecular Ecology, 21, 16: 4010-4023. doi: 10.1111/j.1365-294X.2012.05687.x
Winkler, M.; Tribsch, A.; Schneeweiss, G.M.; Brodbeck, S.; Gugerli, F.; Holderegger, R.; Abbotts, R.J.; Schönswetter, P., 2012: Tales of the unexpected: phylogeography of the arctic-alpine model plant Saxifraga oppositifolia (Saxifragaceae) revisited. Molecular Ecology, 21, 18: 4618-4630. doi: 10.1111/j.1365-294X.2012.05705.x
Peintinger, M.; Arrigo, N.; Brodbeck, S.; Koller, A.; Imsand, M.; Holderegger, R., 2012: Genetic differentiation of the endemic grass species Deschampsia littoralis at pre-Alpine lakes. Alpine Botany, 122, 2: 87-93. doi: 10.1007/s00035-012-0107-y
Parisod, C.; Holderegger, R., 2012: Meeting review. Adaptive landscape genetics: pitfalls and benefits. Molecular Ecology, 21, 15: 3644-3646. doi: 10.1111/j.1365-294X.2012.05675.x
Manel, S.; Gugerli, F.; Thuiller, W.; Alvarez, N.; Legendre, P.; Holderegger, R.; Gielly, L.; Taberlet, P.; IntraBioDiv Consortium, 2012: Broad-scale adaptive genetic variation in alpine plants is driven by temperature and precipitation. Molecular Ecology, 21, 15: 3729-3738. doi: 10.1111/j.1365-294X.2012.05656.x
Kormann, U.; Gugerli, F.; Ray, N.; Excoffier, L.; Bollmann, K., 2012: Parsimony-based pedigree analysis and individual-based landscape genetics suggest topography to restrict dispersal and connectivity in the endangered capercaillie. Biological Conservation, 152: 241-252. doi: 10.1016/j.biocon.2012.04.011
Keller, D.; Van Strien, M.J.; Holderegger, R., 2012: Do landscape barriers affect functional connectivity of populations of an endangered damselfly?. Freshwater Biology, 57, 7: 1373-1384. doi: 10.1111/j.1365-2427.2012.02797.x
Kamm, U.; Gugerli, F.; Rotach, P.; Edwards, P.; Holderegger, R., 2012: Seltenes und zerstreutes Vorkommen: Auswirkungen auf den Paarungserfolg des Speierlings. Schweizerische Zeitschrift für Forstwesen, 163, 4: 130-136. doi: 10.3188/szf.2012/0130
Jay, F.; Manel, S.; Alvarez, N.; Durand, E.Y.; Thuiller, W.; Holderegger, R.; Taberlet, P.; François, O., 2012: Forecasting changes in population genetic structure of alpine plants in response to global warming. Molecular Ecology, 21, 10: 2354-2368. doi: 10.1111/j.1365-294X.2012.05541.x
Holderegger, R.; Gugerli, F., 2012: Where do you come from, where do you go? Directional migration rates in landscape genetics. Molecular Ecology, 21, 23: 5640-5642. doi: 10.1111/mec.12032
Hepenstrick, D.; Thiel, D.; Holderegger, R.; Gugerli, F., 2012: Genetic discontinuities in roe deer (Capreolus capreolus) coincide with fenced transportation infrastructure. Basic and Applied Ecology, 13, 7: 631-638. doi: 10.1016/j.baae.2012.08.009
Aavik, T.; Edwards, P.J.; Holderegger, R.; Graf, R.; Billeter, R., 2012: Genetic consequences of using seed mixtures in restoration: a case study of a wetland plant Lychnis flos-cuculi. Biological Conservation, 145, 1: 195-204. doi: 10.1016/j.biocon.2011.11.004
Barthe, S.; Gugerli, F.; Barkley, N.A.; Maggia, L.; Cardi, C.; Scotti, I., 2012: Always look on both sides: phylogenetic information conveyed by simple sequence repeat allele sequences. PLoS One, 7, 7: e40699 (9 pp.). doi: 10.1371/journal.pone.0040699
Widmer, I.; Dal Grande, F.; Excoffier, L.; Holderegger, R.; Keller, C.; Mikryukov, V.S.; Scheidegger, C., 2012: European phylogeography of the epiphytic lichen fungus Lobaria pulmonaria and its green algal symbiont. Molecular Ecology, 21, 23: 5827-5844. doi: 10.1111/mec.12051
Taberlet, P.; Zimmermann, N.E.; Englisch, T.; Tribsch, A.; Holderegger, R.; Alvarez, N.; Niklfeld, H.; Coldea, G.; Mirek, Z.; Moilanen, A.; Ahlmer, W.; Marsan, P.A.; Bona, E.; Bovio, M.; Choler, P.; Cieślak, E.; Colli, L.; Cristea, V.; Dalmas, J.; ... IntraBioDiv Consortium, 2012: Genetic diversity in widespread species is not congruent with species richness in alpine plant communities. Ecology Letters, 15, 12: 1439-1448. doi: 10.1111/ele.12004
Bolliger, J.; Keller, D.; Holderegger, R., 2011: When landscape variables do not explain migration rates: an example from an endangered dragonfly, Leucorrhinia caudalis (Odonata: Libellulidae). European Journal of Entomology, 108, 2: 327-330. doi: 10.14411/eje.2011.039
Holderegger, R.; Thiel-Egenter, C.; Parisod, C., 2011: Marie Brockmann-Jerosch and her influence on Alpine phylogeography. Alpine Botany, 121, 1: 5-10. doi: 10.1007/s00035-010-0086-9
Waser, N.M.; Wirth, L.R.; Graf, R.; Gugerli, F.; Landergott, U.; Erhardt, A.; Linder, H.P.; Holderegger, R., 2011: Effects of floral neighborhood on seed set and degree of outbreeding in a high-alpine cushion plant. Oecologia, 167, 2: 427-434. doi: 10.1007/s00442-011-1985-1
Thiel-Egenter, C.; Alvarez, N.; Holderegger, R.; Tribsch, A.; Englisch, T.; Wohlgemuth, T.; Colli, L.; Gaudeul, M.; Gielly, L.; Jogan, N.; Linder, H.P.; Negrini, R.; Niklfeld, H.; Pellecchia, M.; Rioux, D.; Schönswetter, P.; Taberlet, P.; Van Loo, M.; Winkler, M.; ... Gugerli, F., 2011: Break zones in the distributions of alleles and species in alpine plants. Journal of Biogeography, 38, 4: 772-782. doi: 10.1111/j.1365-2699.2010.02441.x
Meirmans, P.G.; Goudet, J.; IntraBioDiv Consortium; Gaggiotti, O.E., 2011: Ecology and life history affect different aspects of the population structure of 27 high-alpine plants. Molecular Ecology, 20, 15: 3144-3155. doi: 10.1111/j.1365-294X.2011.05164.x
Kremer, A.; Vinceti, B.; Alia, R.; Burczyk, J.; Cavers, S.; Degen, B.; Finkeldey, R.; Fluch, S.; Gömöry, D.; Gugerli, F.; Koelewijn, H.P.; Koskela, J.; Lefèvre, F.; Morgante, M.; Mueller-Starck, G.; Plomion, C.; Taylor, G.; Turok, J.; Savolainen, O.; Ziegenhagen, B., 2011: Forest ecosystem genomics and adaptation: EVOLTREE conference report. Tree Genetics and Genomes, 7, 4: 869-875. doi: 10.1007/s11295-011-0378-2
Kamm, U.; Gugerli, F.; Rotach, P.; Edwards, P.; Holderegger, R., 2011: Genetic consequences of low local tree densities - implications for the management of naturally rare, insect pollinated species in temperate forests. Forest Ecology and Management, 262, 6: 1047-1053. doi: 10.1016/j.foreco.2011.05.040
Angelone, S.; Kienast, F.; Holderegger, R., 2011: Where movement happens: scale-dependent landscape effects on genetic differentiation in the European tree frog. Ecography, 34, 5: 714-722. doi: 10.1111/j.1600-0587.2010.06494.x
Keller, D.; Brodbeck, S.; Flöss, I.; Vonwil, G.; Holderegger, R., 2011: Ausbreitung und Besiedlungsgeschichte der Zierlichen Moosjungfer Leucorrhinia caudalis in der Schweiz (Odonata: Libellulidae). Entomo Helvetica, 4: 139-152.
Buehler, D.; Graf, R.; Holderegger, R.; Gugerli, F., 2011: Using the 454 pyrosequencing-based technique in the development of nuclear microsatellite loci in the alpine plant Arabis alpina (Brassicaceae). American Journal of Botany, 98, 5: e103-e105. doi: 10.3732/ajb.1000488
Jacob, G.; Debrunner, R.; Gugerli, F.; Schmid, B.; Bollmann, K., 2010: Field surveys of capercaillie (Tetrao urogallus) in the Swiss Alps underestimated local abundance of the species as revealed by genetic analyses of non-invasive samples. Conservation Genetics, 11, 1: 33-44. doi: 10.1007/s10592-008-9794-8
Kamm, U.; Gugerli, F.; Rotach, P.; Edwards, P.; Holderegger, R., 2010: Open areas in a landscape enhance pollen-mediated gene flow of a tree species: evidence from northern Switzerland. Landscape Ecology, 25, 6: 903-911. doi: 10.1007/s10980-010-9468-z
Csencsics, D.; Brodbeck, S.; Holderegger, R., 2010: Cost-effective, species-specific microsatellite development for the endangered dwarf bulrush (Typha minima) using next-generation sequencing technology. Journal of Heredity, 101, 6: 789-793. doi: 10.1093/jhered/esq069
Jimenez, A.; Holderegger, R.; Csencsics, D.; Quintanilla, L.G., 2010: Microsatellites reveal substantial among-population genetic differentiation and strong inbreeding in the relict fern Dryopteris aemula. Annals of Botany, 106, 1: 149-155. doi: 10.1093/aob/mcq094
Storfer, A.; Murphy, M.a.; Spear, S.F.; Holderegger, R.; Waits, L.P., 2010: Landscape genetics: where are we now?. Molecular Ecology, 19, 17: 3496-3514. doi: 10.1111/j.1365-294X.2010.04691.x
Segelbacher, G.; Cushman, S.A.; Epperson, B.K.; Fortin, M.; Francois, O.; Hardy, O.J.; Holderegger, R.; Taberlet, P.; Waits, L.P.; Manel, S., 2010: Applications of landscape genetics in conservation biology: concepts and challenges. Conservation Genetics, 11, 2: 375-385. doi: 10.1007/s10592-009-0044-5
Poncet, B.N.; Herrmann, D.; Gugerli, F.; Taberlet, P.; Holderegger, R.; Gielly, L.; Rioux, D.; Thuiller, W.; Aubert, S.; Manel, S., 2010: Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina. Molecular Ecology, 19, 14: 2896-2907. doi: 10.1111/j.1365-294X.2010.04696.x
Parisod, C.; Holderegger, R.; Brochmann, C., 2010: Evolutionary consequences of autopolyploidy. New Phytologist, 186, 1: 5-17. doi: 10.1111/j.1469-8137.2009.03142.x
Manel, S.; Joost, S.; Epperson, B.K.; Holderegger, R.; Storfer, A.; Rosenberg, M.S.; Scribner, K.T.; Bonin, A.; Fortin, M., 2010: Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field. Molecular Ecology, 19, 17: 3760-3772. doi: 10.1111/j.1365-294X.2010.04717.x
Manel, S.; Poncet, B.N.; Legendre, P.; Gugerli, F.; Holderegger, R., 2010: Common factors drive adaptive genetic variation at different spatial sclaes in Arabis alpina. Molecular Ecology, 19, 17: 3824-3835. doi: 10.1111/j.1365-294X.2010.04716.x
Herrmann, D.; Poncet, B.N.; Manel, S.; Rioux, D.; Gielly, L.; Taberlet, P.; Gugerli, F., 2010: Selection criteria for scoring amplified fragment length polymorphisms (AFLPs) positively affect the reliability of population genetic parameter estimates. Genome, 53, 4: 302-310. doi: 10.1139/g10-006
Gugerli, F.; Sperisen, C., 2010: Genetische Struktur von Waldbäumen im Alpenraum als Folge (post)glazialer Populationsgeschichte. Schweizerische Zeitschrift für Forstwesen, 161, 6: 207-215. doi: 10.3188/szf.2010.0207
Anderson, C.D.; Epperson, B.K.; Fortin, M.; Holderegger, R.; James, P.M.A.; Rosenberg, M.S.; Scribner, K.T.; Spear, S., 2010: Considering spatial and temporal scale in landscape-genetic studies of gene flow. Molecular Ecology, 19, 17: 3565-3575. doi: 10.1111/j.1365-294X.2010.04757.x
Angelone, S.; Flory, C.; Cigler, H.; Rieder-Schmid, J.; Wyss, A.; Kienast, F.; Holderegger, R., 2010: Erfolgreiche Habitatvernetzung für Laubfrösche. Vierteljahrsschrift der Naturforschenden Gesellschaft in Zürich, 155, 3-4: 43-50.
Holderegger, R.; Di Giulio, M., 2010: The genetic effects of roads: a review of empirical evidence. Basic and Applied Ecology, 11, 6: 522-531. doi: 10.1016/j.baae.2010.06.006
Keller, D.; Brodbeck, S.; Flöss, I.; Vonwil, G.; Holderegger, R., 2010: Ecological and genetic measurements of dispersal in a threatened dragonfly. Biological Conservation, 143, 11: 2658-2663. doi: 10.1016/j.biocon.2010.07.008
Bolliger, J.; Le Lay, G.; Holderegger, R., 2010: Landscape genetics. How landscapes affect ecological processes. GAIA: Ecological Perspectives for Science and Society, 19, 3: 238-240. doi: 10.14512/gaia.19.3.19
Holderegger, R.; Buehler, D.; Gugerli, F.; Manel, S., 2010: Landscape genetics of plants. Trends in Plant Science, 15, 12: 675-683. doi: 10.1016/j.tplants.2010.09.002
Landergott, U.; Schneller, J.J.; Holderegger, R.; Thompson, J.D., 2009: Sex-ratio variation and spatial distribution of nuclear and cytoplasmic sex-determining genes in gynodioecious Thymus praecox across altitudinal gradients. Evolutionary Ecology Research, 11: 23-42.
Gugerli, F.; Rüegg, M.; Vendramin, G., 2009: Gradual decline in genetic diversity in Swiss stone pine populations (Pinus cembra) across Switzerland suggests postglacial re-colonization into the Alps from a common eastern glacial refugium. Botanica Helvetica, 119, 1: 13-22. doi: 10.1007/s00035-009-0052-6
Keller, D.; Brodbeck, S.; Holderegger, R., 2009: Characterization of microsatellite loci in Leucorrhinia caudalis, a rare dragonfly endangered throughout Europe. Conservation Genetics Resources, 1, 1: 179-181. doi: 10.1007/s12686-009-9044-5
Wirth, L.R.; Graf, R.; Brodbeck, S.; Reber-Funk, C.; Holderegger, R.; Landergott, U., 2009: Fully informative microsatellite markers for the tetraploid plant Eritrichium nanum (Boraginaceae). Molecular Ecology Resources, 9, 1: 312-314. doi: 10.1111/j.1755-0998.2008.02449.x
Thiel-Egenter, C.; Gugerli, F.; Alvarez, N.; Brodbeck, S.; Cieslak, E.; Colli, L.; Englisch, T.; Gaudeul, M.; Gielly, L.; Korbecka, G.; Negrini, R.; Paun, O.; Pellecchia, M.; Rioux, D.; Ronikier, M.; Schönswetter, P.; Schüpfer, F.; Taberlet, P.; Tribsch, A.; ... IntraBioDiv Consortium, 2009: Effects of species traits on the genetic diversity of high-mountain plants: a multi-species study across the Alps and the Carpathians. Global Ecology and Biogeography, 18, 1: 78-87. doi: 10.1111/j.1466-8238.2008.00421.x
Thiel-Egenter, C.; Holderegger, R.; Brodbeck, S.; IntraBioDiv Consortium; Gugerli, F., 2009: Concordant genetic breaks, identified by combining clustering and tessellation methods, in two co-distributed alpine plant species. Molecular Ecology, 18, 21: 4495-4507. doi: 10.1111/j.1365-294X.2009.04360.x
Salzer, K.; Sebastiani, F.; Gugerli, F.; Buonamici, A.; Vendramin, G.G., 2009: Isolation and characterization of polymorphic nuclear microsatellite loci in Pinus cembra L. Molecular Ecology Resources, 9, 3: 858-861. doi: 10.1111/j.1755-0998.2008.02396.x
Kamm, U.; Rotach, P.; Gugerli, F.; Siroky, M.; Edwards, P.; Holderegger, R., 2009: Frequent long-distance gene flow in a rare temperate forest tree (Sorbus domestica) at the landscape scale. Heredity, 103, 6: 476-482. doi: 10.1038/hdy.2009.70
Höhn, M.; Gugerli, F.; Abran, P.; Bisztray, G.; Buonamici, A.; Cseke, K.; Hufnagel, L.; Quintela-Sabarís, C.; Sebastiani, F.; Vendramin, G.G., 2009: Variation in the chloroplast DNA of Swiss stone pine (Pinus cembra L.) reflects contrasting post-glacial history of populations from the Carpathians and the Alps. Journal of Biogeography, 36, 9: 1798-1806. doi: 10.1111/j.1365-2699.2009.02122.x
Holderegger, R.; Thiel-Egenter, C., 2009: A discussion of different types of glacial refugia used in mountain biogeography and phylogeography. Journal of Biogeography, 36, 3: 476-480. doi: 10.1111/j.1365-2699.2008.02027.x
Balkenhol, N.; Gugerli, F.; Cushman, S.A.; Waits, L.P.; Coulon, A.; Arntzen, J.W.; Holderegger, R.; Wagner, H.H., 2009: Identifying future research needs in landscape genetics: where to from here?. Landscape Ecology, 24: 455-463. doi: 10.1007/s10980-009-9334-z
Angelone, S.; Holderegger, R., 2009: Population genetics suggests effectiveness of habitat connectivity measures for the European tree frog in Switzerland. Journal of Applied Ecology, 46, 4: 879-887. doi: 10.1111/j.1365-2664.2009.01670.x
Alvarez, N.; Thiel-Egenter, C.; Tribsch, A.; Holderegger, R.; Manel, S.; Schönswetter, P.; Taberlet, P.; Brodbeck, S.; Gaudeul, M.; Gielly, L.; Küpfer, P.; Mansion, G.; Negrini, R.; Paun, O.; Pellecchia, M.; Rioux, D.; Schüpfer, F.; Van Loo, M.; Winkler, M.; ... IntraBioDiv Consortium, 2009: History or ecology? Substrate types as a major driver of spatial genetic structure in Alpine plants. Ecology Letters, 12, 7: 632-640. doi: 10.1111/j.1461-0248.2009.01312.x
Di Giulio, M.; Holderegger, R.; Tobias, S., 2009: Effects of habitat and landscape fragmentation on humans and biodiversity in densely populated landscapes. Journal of Environmental Management, 90, 10: 2959-2968. doi: 10.1016/j.jenvman.2009.05.002
Csencsics, D.; Angelone, S.; Paniga, M.; Rotach, P.; Rudow, A.; Sabiote, E.; Schwab, P.; Wohlhauser, P.; Holderegger, R., 2009: A large scale survey of Populus nigra presence and genetic introgression from non-native poplars in Switzerland based on molecular identification. Journal for Nature Conservation, 17, 3: 142-149. doi: 10.1016/j.jnc.2009.01.004
Yu, F.; Krüsi, B.O.; Schneller, J.J.; Schütz, M.; Tang, M.; Wildi, O., 2009: Positive correlation between vegetation dissimilarity and genetic differentiation of Carex sempervirens. Flora, 204, 9: 651-657. doi: 10.1016/j.flora.2008.09.006
Holderegger, R.; Wagner, H.H., 2008: Landscape genetics. BioScience, 58, 3: 199-207. doi: 10.1641/B580306
Tollefsrud, M.M.; Kissling, R.; Gugerli, F.; Johnsen, Ø.; Skrøppa, T.; Cheddadi, R.; Van der Knaap, W.O.; Latałowa, M.; Terhürne-Berson, R.; Litt, T.; Geburek, T.; Brochmann, C.; Sperisen, C., 2008: Genetic consequences of glacial survival and postglacial colonization in Norway spruce: combined analysis of mitochondrial DNA and fossil pollen. Molecular Ecology, 17, 18: 4134-4150. doi: 10.1111/j.1365-294X.2008.03893.x
Scotti, I.; Gugerli, F.; Pastorelli, R.; Sebastiani, F.; Vendramin, G.G., 2008: Maternally and paternally inherited molecular markers elucidate population patterns and inferred dispersal processes on a small scale within a subalpine stand of Norway spruce (Picea abies (L.) Karst.). Forest Ecology and Management, 255, 11: 3806-3812. doi: 10.1016/j.foreco.2008.03.023
Raffl, C.; Holderegger, R.; Parson, W.; Erschbamer, B., 2008: Patterns in genetic diversity of Trifolium pallescens populations do not reflect chronosequence on alpine glacier forelands. Heredity, 100, 5: 526-532. doi: 10.1038/hdy.2008.8
Holderegger, R.; Herrmann, D.; Poncet, B.; Gugerli, F.; Thuiller, W.; Taberlet, P.; Gielly, L.; Rioux, D.; Brodbeck, S.; Aubert, S.; Manel, S., 2008: Land ahead: using genome scans to identify molecular markers of adaptive relevance. Plant Ecology and Diversity, 1, 2: 273-283. doi: 10.1080/17550870802338420
Holderegger, R.; Häner, R.; Csencsics, D.; Angelone, S.; Hoebee, S.E., 2008: S-allele diversity suggests no mate limitation in small populations of a self-incompatible plant. Evolution, International Journal of Organic Evolution, 62, 11: 2922-2928. doi: 10.1111/j.1558-5646.2008.00498.x
Gugerli, F.; Brodbeck, S.; Holderegger, R., 2008: Utility of multilocus genotypes for taxon assignment in stands of closely related European white oaks from Switzerland. Annals of Botany, 102, 5: 855-863. doi: 10.1093/aob/mcn164
Gugerli, F.; Englisch, T.; Niklfeld, H.; Tribsch, A.; Mirek, Z.; Ronikier, M.; Zimmermann, N.E.; Holderegger, R.; Taberlet, P.; IntraBioDiv Consortium, 2008: Relationships among levels of biodiversity and the relevance of intraspecific diversity in conservation - a project synopsis. Perspectives in Plant Ecology, Evolution and Systematics, 10, 4: 259-281. doi: 10.1016/j.ppees.2008.07.001
Gugerli, F.; Gall, R.; Meier, F.; Wermelinger, B., 2008: Pronounced fluctuations of spruce bark beetle (Scolytinae: Ips typographus) populations do not invoke genetic differentiation. Forest Ecology and Management, 256, 3: 405-409. doi: 10.1016/j.foreco.2008.04.038
Gugerli, F.; Brodbeck, S.; Holderegger, R., 2008: Insertions-deletions in a microsatellite flanking region may be resolved by variation in stuttering patterns. Plant Molecular Biology Reporter, 26, 3: 255-262. doi: 10.1007/s11105-008-0034-7
Werth, S.; Gugerli, F.; Holderegger, R.; Wagner, H.H.; Csencsics, D.; Scheidegger, C., 2007: Landscape-level gene flow in Lobaria pulmonaria, an epiphytic lichen. Molecular Ecology, 16, 13: 2807-2815. doi: 10.1111/j.1365-294X.2007.03344.x
Hoebee, S.E.; Arnold, U.; Düggelin, C.; Gugerli, F.; Brodbeck, S.; Rotach, P.; Holderegger, R., 2007: Mating patterns and contemporary gene flow by pollen in a large continuous and a small isolated population of the scattered forest tree Sorbus torminalis. Heredity, 99, 1: 47-55. doi: 10.1038/sj.hdy.6800962
Gugerli, F.; Walser, J.-C.; Dounavi, K.; Holderegger, R.; Finkeldey, R., 2007: Coincidence of small-scale spatial discontinuities in leaf morphology and nuclear microsatellite variation of Quercus petraea and Q. robur in a mixed forest. Annals of Botany, 99, 4: 713-722. doi: 10.1093/aob/mcm006
Angelone, S.; Hilfiker, K.; Holderegger, R.; Bergamini, A.; Hoebee, S.E., 2007: Regional population dynamics define the local genetic structure in Sorbus torminalis. Molecular Ecology, 16: 1291-1301. doi: 10.1111/j.0962-1083.2006.03202.x
Bettin, O.; Cornejo, C.; Edwards, P.J.; Holderegger, R., 2007: Phylogeography of the high alpine plant Senecio halleri (Asteraceae) in the European Alps: in situ glacial survival with postglacial stepwise dispersal into peripheral areas. Molecular Ecology, 16, 12: 2517-2524. doi: 10.1111/j.1365-294X.2007.03273.x
Werth, S.; Wagner, H.H.; Gugerli, F.; Holderegger, R.; Csencsics, D.; Kalwij, J.M.; Scheidegger, C., 2006: Quantifying dispersal and establishment limitation in a population of an epiphytic lichen. Ecology, 87, 8: 2037-2046. doi: 10.1890/0012-9658(2006)87[2037:QDAELI]2.0.CO;2
Werth, S.; Wagner, H.H.; Holderegger, R.; Kalwij, J.M.; Scheidegger, C., 2006: Effect of disturbances on the genetic diversity of an old-forest associated lichen. Molecular Ecology, 15, 4: 911-921. doi: 10.1111/j.1365-294X.2006.02838.x
Holderegger, R.; Kamm, U.; Gugerli, F., 2006: Adaptive vs. neutral genetic diversity: implications for landscape genetics. Landscape Ecology, 21, 6: 797-807. doi: 10.1007/s10980-005-5245-9
Hoebee, S.E.; Menn, C.; Rotach, P.; Finkeldey, R.; Holderegger, R., 2006: Spatial genetic structure of Sorbus torminalis: The extent of clonal reproduction in natural stands of a rare tree species with a scattered distribution. Forest Ecology and Management, 226: 1-8. doi: 10.1016/j.foreco.2005.12.024
Landergott, U.; Naciri, Y.; Schneller, J.J.; Holderegger, R., 2006: Allelic configuration and polysomic inheritance of highly variable microsatellites in tetraploid gynodiaecious Thymus praecox agg.. Theoretical and Applied Genetics, 113, 3: 453-465. doi: 10.1007/s00122-006-0310-6
Fournier, N.; Rigling, A.; Dobbertin, M.; Gugerli, F., 2006: Faible différenciation génétique, à partir d'amplification aléatoire d'ADN polymorphe (RAPD), entre les types de pin sylvestre (Pinus sylvestris L.) d'altitude et de plaine dans les Alpes à climat continental. Annals of Forest Science, 63, 4: 431-439. doi: 10.1051/forest:2006023
Holderegger, R.; Walser, J.; Gugerli, F.; Hoebee, S.E.; Scheidegger, C., 2005: Microsatellites reveal regional population differentiation and isolation in Lobaria pulmonaria, an epiphytic lichen. Molecular Ecology, 14, 2: 457-467. doi: 10.1111/j.1365-294x.2004.02423.x
Wagner, H.H.; Holderegger, R.; Werth, S.; Gugerli, F.; Hoebee, S.E.; Scheidegger, C., 2005: Variogram analysis of the spatial genetic structure of continuous populations using multilocus microsatellite data. Genetics, 169, 3: 1739-1752. doi: 10.1534/genetics.104.036038
Gugerli, F.; Parducci, L.; Petit, R.J., 2005: Ancient plant DNA: review and prospects. New Phytologist, 166, 2: 409-418. doi: 10.1111/j.1469-8137.2005.01360.x
Galeuchet, D.J.; Holderegger, R., 2005: Erhaltung und Wiederansiedlung des Kleinen Rohrkolbens (Typha minima) - Vegetationsaufnahmen, Monitoring und genetische Herkunftsanalysen. Botanica Helvetica, 115, 1: 15-32. doi: 10.1007/s00035-005-0704-0
Holderegger, R.; Angelone, S.; Brodbeck, S.; Csencsics, D.; Gugerli, F.; Hoebee, S.E.; Finkeldey, R., 2005: Application of genetic markers to the discrimination of pure European Black Poplar (Populus nigra) from American Black Poplar (P. deltoides) and Hybrid Poplars (P. x canadensis) in Switzerland. Trees: Structure and Function, 19, 6: 742-747. doi: 10.1007/s00468-005-0006-6
Jaeger, J.; Holderegger, R., 2005: Schwellenwerte der Landschaftszerschneidung. GAIA: Ecological Perspectives for Science and Society, 14, 2: 113-118. doi: 10.14512/gaia.14.2.10
Holderegger, R., 2005: Frankham, R.; Ballou, J.D.; Briscoe, D.A., 2004: A primer of conservation genetics. Cambridge, Cambridge University Press. 220 pp. [book review]. Plant Systematics and Evolution, 255: 111-115.
Schönswetter, P.; Stehlik, I.; Holderegger, R.; Tribsch, A., 2005: Molecular evidence for glacial refugia of mountain plants in the European Alps. Molecular Ecology, 14: 3547-3555. doi: 10.1111/j.1365-294X.2005.02683.x
Hilfiker, K.; Holderegger, R.; Rotach, P.; Gugerli, F., 2004: Dynamics of genetic variation in Taxus baccata: local versus regional perspectives. Canadian Journal of Botany, 82: 219-227. doi: 10.1139/B03-136
Hilfiker, K.; Gugerli, F.; Schütz, J.; Rotach, P.; Holderegger, R., 2004: Low RAPD variation and female-biased sex ratio indicate genetic drift in small populations of the dioecious conifer Taxus baccata in Switzerland. Conservation Genetics, 5, 3: 357-365. doi: 10.1023/B:COGE.0000031144.95293.1b
Walser, J.-C.; Gugerli, F.; Holderegger, R.; Kuonen, D.; Scheidegger, C., 2004: Recombination and clonal propagation in different populations of the lichen Lobaria pulmonaria. Heredity, 93: 322-329. doi: 10.1038/sj.hdy.6800505
Holderegger, R.; Abbott, R.J., 2003: Phylogeography of the arctic-alpine Saxifraga oppositifolia (Saxifragaceae) and some related taxa based on cpDNA and its sequence variation. American Journal of Botany, 90, 6: 931-936. doi: 10.3732/ajb.90.6.931
Holderegger, R.; Stehlik, I.; Smith, L.; Abbott, J., 2003: Populations of Antarctic Hairgrass (Deschampsia antarctica) Show Low Genetic Diversity. Arctic, Antarctic, and Alpine Research, 35, 2: 214-217. doi: 10.1657/1523-0430(2003)035[0214:Poahda]2.0.Co;2
Landergott, U.; Kozlowski, G.; Schneller, J.J.; Holderegger, R., 2003: The importance of recent population history for understanding genetic diversity in threatened species, with special reference to Dryopteris cristata. Fern Gazette, 17, 1: 39-51.
Holderegger, R., 2002: De Nettancourt, D.: Incompatibility and incongruity in wild and cultivated plants. [book review]. Plant Systematics and Evolution, 232: 263-266.
Stehlik, I.; Blattner, F.R.; Holderegger, R.; Bachmann, K., 2002: Nunatak survival of the high Alpine plant Eritrichium nanum (L.) Gaudin in the central Alps during the ice ages. Molecular Ecology, 11: 2027-2036. doi: 10.1046/j.1365-294X.2002.01595.x
Holderegger, R.; Stehlik, I.; Abbott, J., 2002: Molecular analysis of the Pleistocene history of Saxifraga oppositifolia in the Alps. Molecular Ecology, 11: 1409-1418. doi: 10.1046/j.1365-294X.2002.01548.x
Galeuchet, D.J.; Holderegger, R.; Rutishauser, R.; Schneller, J.J., 2002: Conservation biology of the endangered Typha minima along the upper river Rhine: isozyme diversity and breeding system. Aquatic Botany, 74: 19-32.
Gugerli, F.; Holderegger, R., 2001: Nunatak survival, tabula rasa and the influence of the Pleistocene ice-ages on plant evolution in mountain areas. Trends in Plant Science, 6, 9: 397-398. doi: 10.1016/S1360-1385(01)02053-2
Gugerli, F.; Sperisen, C.; Büchler, U.; Brunner, I.; Brodbeck, S.; Palmer, J.D.; Qiu, Y.-L., 2001: The Evolutionary Split of Pinaceae from Other Conifers: Evidence from an Intron Loss and a Multigene Phylogeny. Molecular Phylogenetics and Evolution, 21, 2: 167-175. doi: 10.1006/mpev.2001.1004
Gugerli, F.; Senn, J.; Anzidei, M.; Madaghiele, A.; Büchler, U.; Sperisen, C.; Vendramin, G.G., 2001: Chloroplast microsatellites and mitochondrial nad1 intron 2 sequences indicate congruent phylogenetic relationships among Swiss stone pine (Pinus cembra), Siberian stone pine (P. sibirica), and Siberian dwarf pine (P. pumila). Molecular Ecology, 10: 1489-1497.
Gugerli, F.; Sperisen, C.; Büchler, U.; Magni, F.; Geburek, T.; Jeandroz, S.; Senn, J., 2001: Haplotype variation in a mitochondrial tandem repeat of Norway spruce (Picea abies) populations suggests a serious founder effect during postglacial re-colonization of the western Alps. Molecular Ecology, 10: 1255-1263. doi: 10.1046/j.1365-294X.2001.01279.x
Sperisen, C.; Büchler, U.; Gugerli, F.; Matyas, G.; Geburek, T.; Vendramin, G.G., 2001: Tandem repeats in plant mitochondrial genomes: application to the analysis of population differentiation in the conifer Norway spruce. Molecular Ecology, 10: 257-263. doi: 10.1046/j.1365-294X.2001.01180.x
Eichenberger, K.; Gugerli, F.; Schneller, J.J., 2000: Morphological and molecular diversity of Swiss common bean cultivars (Phaseolus vulgaris L., Fabaceae). Botanica Helvetica, 110: 61-77.
Sperisen, C.; Gugerli, F.; Büchler, U.; Mátyás, G., 2000: Comparison of two rapid DNA extraction protocols for gymnosperms for application in popupation genetic and phylogenetic studies. Forest Genetics, 7, 2: 133-136.
Von Flüe, I.; Gugerli, F.; Holderegger, R.; Schneller, J.J., 1999: Genetic and morphological variability in alpine Saxifraga oppositifolia L. after colonization. Feddes Repertorium, 110, 7-8: 555-559.
Gugerli, F.; Eichenberger, K.; Schneller, J.J., 1999: Promiscuity in populations of the cushion plant Saxifraga oppositifolia in the Swiss Alps as inferred from random amplified polymorphic DNA (RAPD). Molecular Ecology, 8: 453-461. doi: 10.1046/j.1365-294X.1999.00586.x
Schneller, J.J.; Holderegger, R.; Gugerli, F.; Eichenberger, K.; Lutz, E., 1998: Patterns of genetic variation detected by RAPDs suggest a single origin with subsequent mutations and long-distance dispersal in the apomictic fern Dryopteris remota (Dryopteridaceae). American Journal of Botany, 85: 1038-1042.
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