Varietà genetica e genetica della conservazione
Contenuto principale
La misura in cui le specie vegetali o animali riescono ad adattarsi al proprio ambiente dipende dalla loro varietà genetica. Noi studiamo i processi ecologici in popolazioni di funghi, piante e animali, applicando metodi di genetica che integriamo con indagini sperimentali.
Come si adattano le piante alpine al cambiamento delle condizioni ambientali? Qual è l’influenza di strade sulla diffusione di popolazioni e sulle loro interrelazioni? Come si ripercuote la riproduzione fra consanguinei sulle specie rare?
Risposte a queste domande si possono trovare grazie a metodi genetici. Con metodi di genetica ed esperimenti, ad esempio in serra, studiamo i processi ecologici in popolazioni vegetali e animali, classifichiamo le specie in base alle loro sequenze di DNA (eDNA). Nelle nostre ricerche ci concentriamo su specie che hanno un ruolo importante nell’ecosistema oppure che sono rare o a rischio. I dati che ne ricaviamo costituiscono basi importanti per la pianificazione e l’applicazione di misure di protezione della natura e delle specie, ma anche per la selvicoltura.
ULTERIORI INFORMAZIONI
Contatto
Prof. Dr. Rolf Holderegger
capo dell'unità di ricerca, Membro della Direzione
Dr. Felix Gugerli Künzle
stv. Gruppenleiter/in, Senior Scientist
Prof. Dr. Loïc Pellissier
Joint Professorship, Gruppenleiter
Pubblicazioni
Boch, S.; Saiz, H.; Allan, E.; Schall, P.; Prati, D.; Schulze, E.; Hessenmöller, D.; Sparrius, L.B.; Fischer, M., 2021: Direct and indirect effects of management intensity and environmental factors on the functional diversity of lichens in Central European Forests. Microorganisms, 9, 2: 463 (18 pp.). doi: 10.3390/microorganisms9020463
Schenker, L.; Bollmann, K.; Rehnus, M.; Brodbeck, S.; Gugerli, F., 2020: Hare's affairs: lessons learnt from a noninvasive genetic monitoring for tracking mountain hare individuals. Ecology and Evolution, 10, 18: 10150-10166. doi: 10.1002/ece3.6676
Rellstab, C.; Zoller, S.; Sailer, C.; Tedder, A.; Gugerli, F.; Shimizu, K.K.; Holderegger, R.; Widmer, A.; Fischer, M.C., 2020: Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species. Molecular Ecology, 29, 22: 4350-4365. doi: 10.1111/mec.15648
Miyauchi, S.; Kiss, E.; Kuo, A.; Drula, E.; Kohler, A.; Sánchez-García, M.; Morin, E.; Andreopoulos, B.; Barry, K.W.; Bonito, G.; Peter, M.; Pfister, S.; Martin, F.M., 2020: Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Communications, 11: 5125 (17 pp.). doi: 10.1038/s41467-020-18795-w
Alsos, I.G.; Lavergne, S.; Merkel, M.K.F.; Boleda, M.; Lammers, Y.; Alberti, A.; Pouchon, C.; Denoeud, F.; Pitelkova, I.; Pușcaș, M.; Roquet, C.; Hurdu, B.; Thuiller, W.; Zimmermann, N.E.; Hollingsworth, P.M.; Coissac, E., 2020: The treasure vault can be opened: large-scale genome skimming works well using herbarium and silica gel dried material. Plants, 9, 4: 432 (18 pp.). doi: 10.3390/plants9040432
Bollmann, K.; Kraus, D.; Paillet, Y.; Jonsson, B.G.; Gustafsson, L.; Mergner, U.; Krumm, F., 2020: A unifying framework for the conservation of biodiversity in multi-functional European forests. In: Krumm, F.; Schuck, A.; Rigling, A. (eds), 2020: How to balance forestry and biodiversity conservation. A view across Europe. Birmensdorf, European Forest Institute (EFI); Swiss Federal Institute for Forest, Snow and Landscape Research (WSL). 27-45.
Degtjarenko, P.; Mark, K.; Moisejevs, R.; Himelbrant, D.; Stepanchikova, I.; Tsurykau, A.; Randlane, T.; Scheidegger, C., 2020: Low genetic differentiation between apotheciate Usnea florida and sorediate Usnea subfloridana (Parmeliaceae, Ascomycota) based on microsatellite data. Fungal Biology, 124, 10: 892-902. doi: 10.1016/j.funbio.2020.07.007
Dutech, C.; Feau, N.; Lesur, I.; Ehrenmann, F.; Letellier, T.; Li, B.; Mouden, C.; Guichoux, E.; Desprez-Loustau, M.L.; Gross, A., 2020: An easy and robust method for isolation and validation of single-nucleotide polymorphic markers from a first Erysiphe alphitoides draft genome. Mycological Progress, 19: 615-628. doi: 10.1007/s11557-020-01580-w
Beenken, L.; Gross, A.; Queloz, V., 2020: Phylogenetic revision of Petrakia and Seifertia (Melanommataceae, Pleosporales): new and rediscovered species from Europe and North America. Mycological Progress, 19, 5: 417-440. doi: 10.1007/s11557-020-01567-7
Degtjarenko, P.; Jüriado, I.; Mandel, T.; Tõrra, T.; Saag, A.; Scheidegger, C.; Randlane, T., 2019: Microsatellite based genetic diversity of the widespread epiphytic lichen Usnea subfloridana (Parmeliaceae, Ascomycota) in Estonia: comparison of populations from the mainland and an island. MycoKeys, 58: 27-45. doi: 10.3897/mycokeys.58.36557
Eggenberger, H.; Frey, D.; Pellissier, L.; Ghazoul, J.; Fontana, S.; Moretti, M., 2019: Urban bumblebees are smaller and more phenotypically diverse than their rural counterparts. Journal of Animal Ecology, 88, 10: 1522-1533. doi: 10.1111/1365-2656.13051
Devkota, S.; Chaudhary, R.P.; Werth, S.; Scheidegger, C., 2019: Genetic diversity and structure of the epiphytic foliose lichen Lobariapindarensis in the Himalayas depends on elevation. Fungal Ecology, 41: 245-255. doi: 10.1016/j.funeco.2019.07.002
Holderegger, R.; Balkenhol, N.; Bolliger, J.; Engler, J.O.; Gugerli, F.; Hochkirch, A.; Nowak, C.; Segelbacher, G.; Widmer, A.; Zachos, F.E., 2019: Conservation genetics: linking science with practice. Molecular Ecology, 28, 17: 3848-3856. doi: 10.1111/mec.15202
Avanzi, C.; Piermattei, A.; Piotti, A.; Büntgen, U.; Heer, K.; Opgenoorth, L.; Spanu, I.; Urbinati, C.; Vendramin, G.G.; Leonardi, S., 2019: Disentangling the effects of spatial proximity and genetic similarity on individual growth performances in Norway spruce natural populations. Science of the Total Environment, 650: 493-504. doi: 10.1016/j.scitotenv.2018.08.348
Boluda, C.G.; Rico, V.J.; Divakar, P.K.; Nadyeina, O.; Myllys, L.; McMullin, R.T.; Zamora, J.C.; Scheidegger, C.; Hawksworth, D.L., 2019: Evaluating methodologies for species delimitation: the mismatch between phenotypes and genotypes in lichenized fungi (Bryoria sect. Implexae, Parmeliaceae). Persoonia, 42: 75-100. doi: 10.3767/persoonia.2019.42.04
Luqman, H.; Muller, R.; Vaupel, A.; Brodbeck, S.; Bolliger, J.; Gugerli, F., 2018: No distinct barrier effects of highways and a wide river on the genetic structure of the Alpine newt (Ichthyosaura alpestris) in densely settled landscapes. Conservation Genetics, 19, 3: 673-685. doi: 10.1007/s10592-018-1046-y
Yannic, G.; Ortego, J.; Pellissier, L.; Lecomte, N.; Bernatchez, L.; Côté, S.D., 2018: Linking genetic and ecological differentiation in an ungulate with a circumpolar distribution. Ecography, 41, 6: 922-937. doi: 10.1111/ecog.02995
DiLeo, M.F.; Holderegger, R.; Wagner, H.H., 2018: Contemporary pollen flow as a multiscale process: evidence from the insect‐pollinated herb, Pulsatilla vulgaris. Journal of Ecology, 106, 6: 2242-2255. doi: 10.1111/1365-2745.12992
Rogivue, A.; Graf, R.; Parisod, C.; Holderegger, R.; Gugerli, F., 2018: The phylogeographic structure of Arabis alpina in the Alps shows consistent patterns across different types of molecular markers and geographic scales. Alpine Botany, 128, 1: 35-45. doi: 10.1007/s00035-017-0196-8
Halbritter, A.H.; Fior, S.; Keller, I.; Billeter, R.; Edwards, P.J.; Holderegger, R.; Karrenberg, S.; Pluess, A.R.; Widmer, A.; Alexander, J.M., 2018: Trait differentiation and adaptation of plants along elevation gradients. Journal of Evolutionary Biology, 31, 6: 784-800. doi: 10.1111/jeb.13262
Djukic, I.; Kepfer-Rojas, S.; Schmidt, I.K.; Larsen, K.S.; Beier, C.; Berg, B.; Verheyen, K.; Caliman, A.; Paquette, A.; Gutiérrez-Girón, A.; Rixen, C.; Sutter, F.; Von Oppen, J.; Schaub, M.; Didion, M.; Wipf, S.; Tóth, Z., 2018: Early stage litter decomposition across biomes. Science of the Total Environment, 628-629: 1369-1394. doi: 10.1016/j.scitotenv.2018.01.012
Lerch, M.; Nadyeina, O.; Scheidegger, C., 2018: Genetic structure of Lobaria pulmonaria in the Alps as a result of post-glacial recolonization history. Herzogia, 31, 1: 650-665. doi: 10.13158/heia.31.1.2018.650
Milanesi, P.; Caniglia, R.; Fabbri, E.; Puopolo, F.; Galaverni, M.; Holderegger, R., 2018: Combining Bayesian genetic clustering and ecological niche modeling: insights into wolf intraspecific genetic structure. Ecology and Evolution, 8, 22: 11224-11234. doi: 10.1002/ece3.4594
Nadyeina, O.; Zarabska-Bożejewicz, D.; Wiedmer, A.; Cornejo, C.; Scheidegger, C., 2017: Polymorphic fungus-specific microsatellite markers of Bactrospora dryina reveal multiple colonizations of trees. Lichenologist, 49, 6: 561-577. doi: 10.1017/S0024282917000548
Tsykun, T.; Rellstab, C.; Dutech, C.; Sipos, G.; Prospero, S., 2017: Comparative assessment of SSR and SNP markers for inferring the population genetic structure of the common fungus Armillaria cepistipes. Heredity, 119, 5: 371-380. doi: 10.1038/hdy.2017.48
Schoebel, C.N.; Botella, L.; Lygis, V.; Rigling, D., 2017: Population genetic analysis of a parasitic mycovirus to infer the invasion history of its fungal host. Molecular Ecology, 26, 9: 2482-2497. doi: 10.1111/mec.14048
Rellstab, C.; Fischer, M.C.; Zoller, S.; Graf, R.; Tedder, A.; Shimizu, K.K.; Widmer, A.; Holderegger, R.; Gugerli, F., 2017: Local adaptation (mostly) remains local: reassessing environmental associations of climate-related candidate SNPs in Arabidopsis halleri. Heredity, 118, 2: 193-201. doi: 10.1038/hdy.2016.82
Milanesi, P.; Holderegger, R.; Caniglia, R.; Fabbri, E.; Galaverni, M.; Randi, E., 2017: Expert-based versus habitat-suitability models to develop resistance surfaces in landscape genetics. Oecologia, 183, 1: 67-79. doi: 10.1007/s00442-016-3751-x
Serra-Varela, M.J.; Alía, R.; Ruiz Daniels, R.; Zimmermann, N.E.; Gonzalo-Jiménez, J.; Grivet, D., 2017: Assessing vulnerability of two Mediterranean conifers to support genetic conservation management in the face of climate change. Diversity and Distributions, 23, 5: 507-516. doi: 10.1111/ddi.12544
Schmid, S.; Genevest, R.; Gobet, E.; Suchan, T.; Sperisen, C.; Tinner, W.; Alvarez, N., 2017: HyRAD-X, a versatile method combining exome capture and RAD sequencing to extract genomic information from ancient DNA. Methods in Ecology and Evolution, 8, 10: 1374-1388. doi: 10.1111/2041-210X.12785
Pellissier, L.; Kostikova, A.; Litsios, G.; Salamin, N.; Alvarez, N., 2017: High rate of protein coding sequence evolution and species diversification in the lycaenids. Frontiers in Ecology and Evolution, 5: 90 (7 pp.). doi: 10.3389/fevo.2017.00090
Milanesi, P.; Holderegger, R.; Bollmann, K.; Gugerli, F.; Zellweger, F., 2017: Three-dimensional habitat structure and landscape genetics: a step forward in estimating functional connectivity. Ecology, 98, 2: 393-402. doi: 10.1002/ecy.1645
Fischer, M.C.; Rellstab, C.; Leuzinger, M.; Roumet, M.; Gugerli, F.; Shimizu, K.K.; Holderegger, R.; Widmer, A., 2017: Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri. BMC Genomics, 18: 69 (15 pp.). doi: 10.1186/s12864-016-3459-7
Trapiello, E.; Schoebel, C.N.; Rigling, D., 2017: Fungal community in symptomatic ash leaves in Spain. Baltic Forestry, 23, 1: 68-73.
Klopfenstein, N.B.; Stewart, J.E.; Ota, Y.; Hanna, J.W.; Richardson, B.A.; Ross-Davis, A.L.; Elías-Román, R.D.; Korhonen, K.; Keča, N.; Iturritxa, E.; Alvarado-Rosales, D.; Solheim, H.; Brazee, N.J.; Łakomy, P.; Cleary, M.R.; Hasegawa, E.; Kikuchi, T.; Garza-Ocañas, F.; Tsopelas, P.; ... Kim, M., 2017: Insights into the phylogeny of Northern Hemisphere Armillaria: neighbor-net and Bayesian analyses of translation elongation factor 1-α gene sequences. Mycologia, 109, 1: 75-91. doi: 10.1080/00275514.2017.1286572
Thiel-Egenter, C., 2017: Naturschutzgenetik aus Ökobürosicht – Chancen und Erfahrungen. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 71-76.
Schmidt, B.R.; Grünig, C.R., 2017: Einsatz von eDNA im Amphibien-Monitoring. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 57-62.
Rellstab, C.; Fischer, M.C.; Csencsics, D.; Gugerli, F.; Holderegger, R., 2017: Bedeutung der lokalen Anpassung in der Naturschutzgenetik. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 31-37.
Meier, R.; Stapfer, A., 2017: Werkzeugkasten für genetische Methoden in der Biodiversitätsförderung. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 49-56.
Hartmann, M.; Sperisen, C., 2017: Der Boden – eine wertvolle Ressource für die genetische Vielfalt. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 39-47.
Cordillot, F., 2017: Bedeutung der Naturschutzgenetik für den Bund. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 63-69.
Bühler, C.; Dubey, S., 2017: Application de la génétique de la conservation dans les bureaux d’études en écologie. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 77-82.
Bolliger, J.; Gugerli, F., 2017: Isoliert oder vernetzt? Auswirkungen der Landschaft auf den Genfluss. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 23-29.
Biebach, I.; Keller, L., 2017: Inzucht und ihre Bedeutung für den Naturschutz. In: Csencsics, D.; Gugerli, F. (eds), 2017: Naturschutzgenetik. Forum für Wissen 2017, WSL Birmensdorf. 15-22.
Frank, A.; Howe, G.T.; Sperisen, C.; Brang, P.; St. Clair, J.B.; Schmatz, D.R.; Heiri, C., 2017: Risk of genetic maladaptation due to climate change in three major European tree species. Global Change Biology, 23, 12: 5358-5371. doi: 10.1111/gcb.13802
Fournier, B.; Mouly, A.; Moretti, M.; Gillet, F., 2017: Contrasting processes drive alpha and beta taxonomic, functional and phylogenetic diversity of orthopteran communities in grasslands. Agriculture, Ecosystems and Environment, 242: 43-52. doi: 10.1016/j.agee.2017.03.021
Frank, A.; Pluess, A.R.; Howe, G.T.; Sperisen, C.; Heiri, C., 2017: Quantitative genetic differentiation and phenotypic plasticity of European beech in a heterogeneous landscape: indications for past climate adaptation. Perspectives in Plant Ecology, Evolution and Systematics, 26: 1-13. doi: 10.1016/j.ppees.2017.02.001
Milanesi, P.; Breiner, F.T.; Puopolo, F.; Holderegger, R., 2017: European human-dominated landscapes provide ample space for the recolonization of large carnivore populations under future land change scenarios. Ecography, 40, 12: 1359-1368. doi: 10.1111/ecog.02223
Frank, A.; Sperisen, C.; Howe, G.T.; Brang, P.; Walthert, L.; St.Clair, J.B.; Heiri, C., 2017: Distinct genecological patterns in seedlings of Norway spruce and silver fir from a mountainous landscape. Ecology, 98, 1: 211-227. doi: 10.1002/ecy.1632
Braaker, S.; Kormann, U.; Bontadina, F.; Obrist, M.K., 2017: Prediction of genetic connectivity in urban ecosystems by combining detailed movement data, genetic data and multi-path modelling. Landscape and Urban Planning, 160: 107-114. doi: 10.1016/j.landurbplan.2016.12.011
Lygis, V.; Prospero, S.; Burokiene, D.; Schoebel, C.N.; Marciulyniene, D.; Norkute, G.; Rigling, D., 2017: Virulence of the invasive ash pathogen Hymenoscyphus fraxineus in old and recently established populations. Plant Pathology, 66, 5: 783-791. doi: 10.1111/ppa.12635
Gugerli, F.; Frank, A.; Rellstab, C.; Pluess, A.R.; Moser, B.; Arend, M.; Sperisen, C.; Wohlgemuth, T.; Heiri, C., 2016: Variation génétique et adaptation locale des essences forestières sous le signe des changements climatiques. In: Pluess, A.R.; Augustin, S.; Brang, P. (eds), 2016: Forêts et changements climatiques. Éléments pour des stratégies d'adaptation. Berne, Haupt. 97-117.
Gugerli, F.; Frank, A.; Rellstab, C.; Pluess, A.R.; Moser, B.; Arend, M.; Sperisen, C.; Wohlgemuth, T.; Heiri, C., 2016: Genetische Variation und lokale Anpassung bei Waldbaumarten im Zeichen des Klimawandels. In: Pluess, A.R.; Augustin, S.; Brang, P. (eds), 2016: Wald im Klimawandel. Grundlagen für Adaptationsstrategien. Bern, Haupt. 93-113.
Sperisen, C.; Pluess, A.R.; Arend, M.; Brang, P.; Gugerli, F.; Heiri, C., 2016: Erhaltung genetischer Ressourcen im Schweizer Wald - heutige Situation und Handlungsbedarf angesichts des Klimawandels. In: Pluess, A.R.; Augustin, S.; Brang, P. (eds), 2016: Wald im Klimawandel. Grundlagen für Adaptationsstrategien. Bern, Haupt. 367-383.
Sperisen, C.; Pluess, A.R.; Arend, M.; Brang, P.; Gugerli, F.; Heiri, C., 2016: Conservation des ressources génétiques dans la forêt suisse - situation actuelle et nécessité d'agir face aux changements climatiques. In: Pluess, A.R.; Augustin, S.; Brang, P. (eds), 2016: Forêts et changements climatiques. Éléments pour des stratégies d'adaptation. Berne, Haupt. 371-388.
Tsuda, Y.; Chen, J.; Stocks, M.; Källman, T.; Sønstebø, J.H.; Parducci, L.; Semerikov, V.; Sperisen, C.; Politov, D.; Ronkainen, T.; Väliranta, M.; Vendramin, G.G.; Tollefsrud, M.M.; Lascoux, M., 2016: The extent and meaning of hybridization and introgression between Siberian spruce (Picea obovata) and Norway spruce (Picea abies): cryptic refugia as stepping stones to the west?. Molecular Ecology, 25, 12: 2773-2789. doi: 10.1111/mec.13654
Schmid, M.; Csencsics, D.; Gugerli, F., 2016: Repetitive flanking sequences challenge microsatellite marker development: a case study in the lepidopteran Melanargia galathea. Molecular Ecology Resources, 16, 6: 1499-1507. doi: 10.1111/1755-0998.12547
Rellstab, C.; Zoller, S.; Walthert, L.; Lesur, I.; Pluess, A.R.; Graf, R.; Bodénès, C.; Sperisen, C.; Kremer, A.; Gugerli, F., 2016: Signatures of local adaptation in candidate genes of oaks (Quercus spp.) with respect to present and future climatic conditions. Molecular Ecology, 25, 23: 5907-5924. doi: 10.1111/mec.13889
Mosca, E.; Gugerli, F.; Eckert, A.J.; Neale, D.B., 2016: Signatures of natural selection on Pinus cembra and P. mugo along elevational gradients in the Alps. Tree Genetics and Genomes, 12, 1: 9 (15 pp.). doi: 10.1007/s11295-015-0964-9
Rehnus, M.; Bollmann, K., 2016: Non-invasive genetic population density estimation of mountain hares (Lepus timidus) in the Alps: systematic or opportunistic sampling?. European Journal of Wildlife Research, 62, 6: 737-747. doi: 10.1007/s10344-016-1053-6
Rellstab, C.; Bühler, A.; Graf, R.; Folly, C.; Gugerli, F., 2016: Using joint multivariate analyses of leaf morphology and molecular-genetic markers for taxon identification in three hybridizing European white oak species (Quercus spp.). Annals of Forest Science, 73, 3: 669-679. doi: 10.1007/s13595-016-0552-7
Mark, K.; Cornejo, C.; Keller, C.; Flück, D.; Scheidegger, C., 2016: Barcoding lichen-forming fungi using 454 pyrosequencing is challenged by artifactual and biological sequence variation. Genome, 59, 9: 685-704. doi: 10.1139/gen-2015-0189
Holderegger, R., 2016: Vielfältige Anwendungen genetischer Methoden im Wald. Schweizerische Zeitschrift für Forstwesen, 167, 6: 308-315. doi: 10.3188/szf.2016.0308
Rellstab, C.; Pluess, A.R.; Gugerli, F., 2016: Lokale Anpassung bei Waldbaumarten: genetische Prozesse und Bedeutung im Klimawandel. Schweizerische Zeitschrift für Forstwesen, 167, 6: 333-340. doi: 10.3188/szf.2016.0333
Degtjarenko, P.; Marmor, L.; Tõrra, T.; Lerch, M.; Saag, A.; Randlane, T.; Scheidegger, C., 2016: Impact of alkaline dust pollution on genetic variation of Usnea subfloridana populations. Fungal Biology, 120, 10: 1165-1174. doi: 10.1016/j.funbio.2016.05.010
Peter, M.; Kohler, A.; Ohm, R.A.; Kuo, A.; Krützmann, J.; Morin, E.; Arend, M.; Barry, K.W.; Binder, M.; Choi, C.; Clum, A.; Copeland, A.; Grisel, N.; Haridas, S.; Kipfer, T.; LaButti, K.; Lindquist, E.; Lipzen, A.; Maire, R.; ... Martin, F.M., 2016: Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum. Nature Communications, 7: 12662 (15 pp.). doi: 10.1038/ncomms12662
Dutech, C.; Prospero, S.; Heinzelmann, R.; Fabreguettes, O.; Feau, N., 2016: Rapid identification of polymorphic sequences in non-model fungal species: the PHYLORPH method tested in Armillaria species. Forest Pathology, 46, 4: 298-308. doi: 10.1111/efp.12256
Frei, M.; Csencsics, D.; Brodbeck, S.; Schweizer, E.; Bühler, C.; Gugerli, F.; Bolliger, J., 2016: Combining landscape genetics, radio-tracking and long-term monitoring to derive management implications for Natterjack toads (Epidalea calamita) in agricultural landscapes. Journal for Nature Conservation, 32: 22-34. doi: 10.1016/j.jnc.2016.04.002
Csencsics, D.; Holderegger, R., 2016: Origin of natural regeneration of black poplar (Populus nigra L.) and co-occurrence with hybrid poplar offspring. Flora, 222: 20-26. doi: 10.1016/j.flora.2016.03.009
Milanesi, P.; Holderegger, R.; Caniglia, R.; Fabbri, E.; Randi, E., 2016: Different habitat suitability models yield different least-cost path distances for landscape genetic analysis. Basic and Applied Ecology, 17, 1: 61-71. doi: 10.1016/j.baae.2015.08.008
Burkart, S.; Gugerli, F.; Senn, J.; Kuehn, R.; Bolliger, J., 2016: Evaluating the functionality of expert-assessed wildlife corridors with genetic data from roe deer. Basic and Applied Ecology, 17, 1: 52-60. doi: 10.1016/j.baae.2015.09.001
Keller, C.; Scheidegger, C., 2016: Multiple mating events and spermatia-mediated gene flow in the lichen-forming fungus Lobaria pulmonaria. Herzogia, 29, 2: 435-450. doi: 10.13158/heia.29.2.2016.435
Chala, D.; Brochmann, C.; Psomas, A.; Ehrich, D.; Gizaw, A.; Masao, C.A.; Bakkestuen, V.; Zimmermann, N.E., 2016: Good-bye to tropical alpine plant giants under warmer climates? Loss of range and genetic diversity in Lobelia rhynchopetalum. Ecology and Evolution, 6, 24: 8931-8941. doi: 10.1002/ece3.2603
Van Strien, M.J.; Holderegger, R.; Van Heck, H.J., 2015: Isolation-by-distance in landscapes: considerations for landscape genetics. Heredity, 114, 1: 27-37. doi: 10.1038/hdy.2014.62
Stockenhuber, R.; Zoller, S.; Shimizu-Inatsugi, R.; Gugerli, F.; Shimizu, K.K.; Widmer, A.; Fischer, M.C., 2015: Efficient detection of novel nuclear markers for Brassicaceae by transcriptome sequencing. PLoS One, 10, 6: e0128181 (19 pp.). doi: 10.1371/journal.pone.0128181
Rellstab, C.; Gugerli, F.; Eckert, A.J.; Hancock, A.M.; Holderegger, R., 2015: A practical guide to environmental association analysis in landscape genomics. Molecular Ecology, 24, 17: 4348-4370. doi: 10.1111/mec.13322
Keller, D.; Holderegger, R.; Van Strien, M.J.; Bolliger, J., 2015: How to make landscape genetics beneficial for conservation management?. Conservation Genetics, 16, 3: 503-512. doi: 10.1007/s10592-014-0684-y
Le Lay, G.; Angelone, S.; Holderegger, R.; Flory, C.; Bolliger, J., 2015: Increasing pond density to maintain a patchy habitat network of the European Treefrog (Hyla arborea). Journal of Herpetology, 49, 2: 217-221. doi: 10.1670/13-056
Burokiene, D.; Prospero, S.; Jung, E.; Marciulyniene, D.; Moosbrugger, K.; Norkute, G.; Rigling, D.; Lygis, V.; Schoebel, C.N., 2015: Genetic population structure of the invasive ash dieback pathogen Hymenoscyphus fraxineus in its expanding range. Biological Invasions, 17, 9: 2743-2756. doi: 10.1007/s10530-015-0911-6
DiLeo, M.F.; Graf, R.; Holderegger, R.; Rico, Y.; Wagner, H.H., 2015: Highly polymorphic microsatellite markers in Pulsatilla vulgaris (Ranunculaceae) using next-generation sequencing. Applications in Plant Sciences, 3, 7: 1500031 (3 pp.). doi: 10.3732/apps.1500031
Lendvay, B.; Höhn, M.; Brodbeck, S.; Mîndrescu, M.; Gugerli, F., 2014: Genetic structure in Pinus cembra from the Carpathian Mountains inferred from nuclear and chloroplast microsatellites confirms post-glacial range contraction and identifies introduced individuals. Tree Genetics and Genomes, 10, 5: 1419-1433. doi: 10.1007/s11295-014-0770-9
Rico, Y.; Holderegger, R.; Boehmer, H.J.; Wagner, H.H., 2014: Directed dispersal by rotational shepherding supports landscape genetic connectivity in a calcareous grassland plant. Molecular Ecology, 23, 4: 832-842. doi: 10.1111/mec.12639
Aavik, T.; Holderegger, R.; Bolliger, J., 2014: The structural and functional connectivity of the grassland plant Lychnis flos-cuculi. Heredity, 112, 5: 471-478. doi: 10.1038/hdy.2013.120
Buehler, D.; Holderegger, R.; Brodbeck, S.; Schnyder, E.; Gugerli, F., 2014: Validation of outlier loci through replication in independent data sets: a test on Arabis alpina. Ecology and Evolution, 4, 22: 4296-4306. doi: 10.1002/ece3.1300
Saag, L.; Mark, K.; Saag, A.; Randlane, T., 2014: Species delimitation in the lichenized fungal genus Vulpicida (Parmeliaceae, Ascomycota) using gene concatenation and coalescent-based species tree approaches. American Journal of Botany, 101, 12: 2169-2182. doi: 10.3732/ajb.1400439
Keller, I.; Alexander, J.M.; Edwards, P.J.; Holderegger, R., 2014: Lokale Anpassungen an verschiedene Höhenlagen. Natur und Landschaft, 89, 4: 145-150. doi: 10.17433/4.2014.50153265.145-150
Schoebel, C.N.; Zoller, S.; Rigling, D., 2014: Detection and genetic characterisation of a novel mycovirus in Hymenoscyphus fraxineus, the causal agent of ash dieback. Infection, Genetics and Evolution, 28: 78-86. doi: 10.1016/j.meegid.2014.09.001
Babst-Kostecka, A.A.; Parisod, C.; Godé, C.; Vollenweider, P.; Pauwels, M., 2014: Patterns of genetic divergence among populations of the pseudometallophyte Biscutella laevigata from southern Poland. Plant and Soil, 383, 1-2: 245-256. doi: 10.1007/s11104-014-2171-0
Van Strien, M.J.; Keller, D.; Holderegger, R.; Ghazoul, J.; Kienast, F.; Bolliger, J., 2014: Landscape genetics as a tool for conservation planning: predicting the effects of landscape change on gene flow. Ecological Applications, 24, 2: 327-339. doi: 10.1890/13-0442.1
Aavik, T.; Bosshard, D.; Edwards, P.J.; Holderegger, R.; Billeter, R., 2014: Fitness in naturally occurring and restored populations of a grassland plant lychnis flos-cuculiy in a Swiss agricultural landscape. Restoration Ecology, 22, 1: 98-106. doi: 10.1111/rec.12020
Gerber, S.; Chadœuf, J.; Gugerli, F.; Lascoux, M.; Buiteveld, J.; Cottrell, J.; Dounavi, A.; Fineschi, S.; Forrest, L.L.; Fogelqvist, J.; Goicoechea, P.G.; Svejgaard Jensen, J.; Salvini, D.; Vendramin, G.G.; Kremer, A., 2014: High rates of gene flow by pollen and seed in oak populations across Europe. PLoS One, 9, 1: e85130 (16 pp.). doi: 10.1371/journal.pone.0085130
Schoebel, C.N.; Stewart, J.; Gruenwald, N.J.; Rigling, D.; Prospero, S., 2014: Population history and pathways of spread of the plant pathogen Phytophthora plurivora. PLoS One, 9, 1: e85368 (11 pp.). doi: 10.1371/journal.pone.0085368
Winkler, M.; Tribsch, A.; Schneeweiss, G.M.; Brodbeck, S.; Gugerli, F.; Holderegger, R.; Schönswetter, P., 2013: Strong nuclear differentiation contrasts with widespread sharing of plastid DNA haplotypes across taxa in European purple saxifrages (Saxifraga section Porphyrion subsection Oppositifoliae). Botanical Journal of the Linnean Society, 173, 4: 622-636. doi: 10.1111/boj.12104
Zulliger, D.; Schnyder, E.; Gugerli, F., 2013: Are adaptive loci transferable across genomes of related species? Outlier and environmental association analyses in Alpine Brassicaceae species. Molecular Ecology, 22, 6: 1626-1639. doi: 10.1111/mec.12199
Schoebel, C.N.; Brodbeck, S.; Buehler, D.; Cornejo, C.; Gajurel, J.; Hartikainen, H.; Keller, D.; Leys, M.; Říčanová, Š.; Segelbacher, G.; Werth, S.; Csencsics, D., 2013: Lessons learned from microsatellite development for nonmodel organisms using 454 pyrosequencing. Journal of Evolutionary Biology, 26, 3: 600-611. doi: 10.1111/jeb.12077
Keller, D.; Holderegger, R.; Van Strien, M.J., 2013: Spatial scale affects landscape genetic analysis of a wetland grasshopper. Molecular Ecology, 22, 9: 2467-2482. doi: 10.1111/mec.12265
Herrmann, M.; Holderegger, R.; Van Strien, M.J., 2013: Influence of parameter settings in automated scoring of AFLPs on population genetic analysis. Molecular Ecology Resources, 13, 1: 128-134. doi: 10.1111/1755-0998.12033
Steinbrecher, R.; Contran, N.; Gugerli, F.; Schnitzler, J.-P.; Zimmer, I.; Menard, T.; Günthardt-Goerg, M.S., 2013: Inter- and intra-specific variability in isoprene production and photosynthesis of Central European oak species. Plant Biology, 15, Suppl. 1: 148-156. doi: 10.1111/j.1438-8677.2012.00688.x
Rellstab, C.; Zoller, S.; Tedder, A.; Gugerli, F.; Fischer, M.C., 2013: Validation of SNP allele frequencies determined by pooled next-generation sequencing in natural populations of a non-model plant species. PLoS One, 8, 11: e80422 (10 pp.). doi: 10.1371/journal.pone.0080422
Manel, S.; Holderegger, R., 2013: Ten years of landscape genetics. Trends in Ecology and Evolution, 28, 10: 614-621. doi: 10.1016/j.tree.2013.05.012
King, G.M.; Gugerli, F.; Fonti, P.; Frank, D.C., 2013: Tree growth response along an elevational gradient: climate or genetics?. Oecologia, 173, 4: 1587-1600. doi: 10.1007/s00442-013-2696-6
Fischer, M.C.; Rellstab, C.; Tedder, A.; Zoller, S.; Gugerli, F.; Shimizu, K.K.; Holderegger, R.; Widmer, A., 2013: Population genomic footprints of selection and associations with climate in natural populations of Arabidopsis halleri from the Alps. Molecular Ecology, 22, 22: 5594-5607. doi: 10.1111/mec.12521
Butterfield, B.J.; Cavieres, L.A.; Callaway, R.M.; Cook, B.J.; Kikvidze, Z.; Lortie, C.J.; Michalet, R.; Pugnaire, F.I.; Schöb, C.; Xiao, S.; Zaitchek, B.; Anthelme, F.; Björk, R.G.; Dickinson, K.; Gavilán, R.; Kanka, R.; Maalouf, J.-P.; Noroozi, J.; Parajuli, R.; ... Brooker, R.W., 2013: Alpine cushion plants inhibit the loss of phylogenetic diversity in severe environments. Ecology Letters, 16, 4: 478-486. doi: 10.1111/ele.12070
Bothwell, H.; Bisbing, S.; Therkildsen, N.O.; Crawford, L.; Alvarez, N.; Holderegger, R.; Manel, S., 2013: Identifying genetic signatures of selection in a non-model species, alpine gentian (Gentiana nivalis L.), using a landscape genetic approach. Conservation Genetics, 14, 2: 467-481. doi: 10.1007/s10592-012-0411-5
Keller, I.; Alexander, J.M.; Holderegger, R.; Edwards, P.J., 2013: Widespread phenotypic and genetic divergence along altitudinal gradients in animals. Journal of Evolutionary Biology, 26, 12: 2527-2543. doi: 10.1111/jeb.12255
Schoebel, C.N.; Jung, E.; Prospero, S., 2013: Development of new polymorphic microsatellite markers for three closely related plant-pathogenic Phytophthora species using 454-pyrosequencing and their potential application. Phytopathology, 103, 10: 1020-1027. doi: 10.1094/PHYTO-01-13-0026-R
Keller, D.; Holderegger, R., 2013: Damselflies use different movement strategies for short- and long-distance dispersal. Insect Conservation and Diversity, 6, 5: 590-597. doi: 10.1111/icad.12016
Keller, D.; Van Strien, M.J.; Herrmann, M.; Bolliger, J.; Edwards, P.J.; Ghazoul, J.; Holderegger, R., 2013: Is functional connectivity in common grasshopper species affected by fragmentation in an agricultural landscape?. Agriculture, Ecosystems and Environment, 175: 39-46. doi: 10.1016/j.agee.2013.05.006
Gugerli, F.; Brandl, R.; Castagneyrol, B.; Franc, A.; Jactel, H.; Koelewijn, H.; Martin, F.; Peter, M.; Pritsch, K.; Schröder, H.; Smulders, M.J.M.; Kremer, A.; Ziegenhagen, B.; Evoltree JERA3 contributors, 2013: Community genetics in the time of next-generation molecular technologies. Molecular Ecology, 22, 12: 3198-3207. doi: 10.1111/mec.12300
Keller, D.; Seidl, I.; Forrer, C.; Home, R.; Holderegger, R., 2013: Schutz der Helm-Azurjungfer Coenagrion mercuriale (Odonata: Coenagrionidae) am Beispiel des Smaragd-Gebiets Oberaargau. Entomo Helvetica, 6: 87-99.
Aavik, T.; Holderegger, R.; Edwards, P.J.; Billeter, R., 2013: Patterns of contemporary gene flow suggest low functional connectivity of grasslands in a fragmented agricultural landscape. Journal of Applied Ecology, 50, 2: 395-403. doi: 10.1111/1365-2664.12053
Buehler, D.; Poncet, B.N.; Holderegger, R.; Manel, S.; Taberlet, P.; Gugerli, F., 2013: An outlier locus relevant in habitat-mediated selection in an alpine plant across independent regional replicates. Evolutionary Ecology, 27, 2: 285-300. doi: 10.1007/s10682-012-9597-8
Maag, N.; Karpati, T.; Bollmann, K., 2013: Semi-natural river system maintains functional connectivity and gene flow of the critically endangered gravel grasshopper (Chorthippus pullus). Biological Conservation, 158: 88-97. doi: 10.1016/j.biocon.2012.08.015
Seymour, M.; Räsänen, K.; Holderegger, R.; Kristjánsson, B.K., 2013: Connectivity in a pond system influences migration and genetic structure in threespine stickleback. Ecology and Evolution, 3, 3: 492-502. doi: 10.1002/ece3.476
Walzer, C.; Kowalczyk, C.; Alexander, J.M.; Baur, B.; Bogliani, G.; Brun, J.; Füreder, L.; Guth, M.; Haller, R.; Holderegger, R.; Kohler, Y.; Kueffer, C.; Righetti, A.; Spaar, R.; Sutherland, W.J.; Ullrich-Schneider, A.; Vanpeene-Bruhier, S.N.; Scheurer, T., 2013: The 50 most important questions relating to the maintenance and restoration of an ecological continuum in the European Alps. PLoS One, 8, 1: e53139 (11 pp.). doi: 10.1371/journal.pone.0053139
Widmer, I.; Dal Grande, F.; Excoffier, L.; Holderegger, R.; Keller, C.; Mikryukov, V.S.; Scheidegger, C., 2012: European phylogeography of the epiphytic lichen fungus Lobaria pulmonaria and its green algal symbiont. Molecular Ecology, 21, 23: 5827-5844. doi: 10.1111/mec.12051
Hoebee, S.E.; Angelone, S.; Csencsics, D.; Määttänen, K.; Holderegger, R., 2012: Diversity of S-alleles and mate availability in 3 populations of self-incompatible wild pear (Pyrus pyraster). Journal of Heredity, 103, 2: 260-267. doi: 10.1093/jhered/esr126
Taberlet, P.; Zimmermann, N.E.; Englisch, T.; Tribsch, A.; Holderegger, R.; Alvarez, N.; Niklfeld, H.; Coldea, G.; Mirek, Z.; Moilanen, A.; Steinmann, K.; Thiel-Egenter, C.; Wohlgemuth, T.; Gugerli, F.; IntraBioDiv Consortium, 2012: Genetic diversity in widespread species is not congruent with species richness in alpine plant communities. Ecology Letters, 15, 12: 1439-1448. doi: 10.1111/ele.12004
Salzer, K.; Gugerli, F., 2012: Reduced fitness at early life stages in peripheral versus core populations of Swiss stone pine (Pinus cembra) is not reflected by levels of inbreeding in seed families. Alpine Botany, 122, 2: 75-85. doi: 10.1007/s00035-012-0106-z
Peintinger, M.; Arrigo, N.; Brodbeck, S.; Koller, A.; Imsand, M.; Holderegger, R., 2012: Genetic differentiation of the endemic grass species Deschampsia littoralis at pre-Alpine lakes. Alpine Botany, 122, 2: 87-93. doi: 10.1007/s00035-012-0107-y
Parisod, C.; Holderegger, R., 2012: Meeting review. Adaptive landscape genetics: pitfalls and benefits. Molecular Ecology, 21, 15: 3644-3646. doi: 10.1111/j.1365-294X.2012.05675.x
Manel, S.; Gugerli, F.; Thuiller, W.; Alvarez, N.; Legendre, P.; Holderegger, R.; Gielly, L.; Taberlet, P.; IntraBioDiv Consortium, 2012: Broad-scale adaptive genetic variation in alpine plants is driven by temperature and precipitation. Molecular Ecology, 21, 15: 3729-3738. doi: 10.1111/j.1365-294X.2012.05656.x
Jay, F.; Manel, S.; Alvarez, N.; Durand, E.Y.; Thuiller, W.; Holderegger, R.; Taberlet, P.; François, O., 2012: Forecasting changes in population genetic structure of alpine plants in response to global warming. Molecular Ecology, 21, 10: 2354-2368. doi: 10.1111/j.1365-294X.2012.05541.x
Hepenstrick, D.; Thiel, D.; Holderegger, R.; Gugerli, F., 2012: Genetic discontinuities in roe deer (Capreolus capreolus) coincide with fenced transportation infrastructure. Basic and Applied Ecology, 13, 7: 631-638. doi: 10.1016/j.baae.2012.08.009
Holderegger, R.; Gugerli, F., 2012: Where do you come from, where do you go? Directional migration rates in landscape genetics. Molecular Ecology, 21, 23: 5640-5642. doi: 10.1111/mec.12032
Winkler, M.; Tribsch, A.; Schneeweiss, G.M.; Brodbeck, S.; Gugerli, F.; Holderegger, R.; Abbotts, R.J.; Schönswetter, P., 2012: Tales of the unexpected: phylogeography of the arctic-alpine model plant Saxifraga oppositifolia (Saxifragaceae) revisited. Molecular Ecology, 21, 18: 4618-4630. doi: 10.1111/j.1365-294X.2012.05705.x
Van Strien, M.J.; Keller, D.; Holderegger, R., 2012: A new analytical approach to landscape genetic modelling: least-cost transect analysis and linear mixed models. Molecular Ecology, 21, 16: 4010-4023. doi: 10.1111/j.1365-294X.2012.05687.x
Kormann, U.; Gugerli, F.; Ray, N.; Excoffier, L.; Bollmann, K., 2012: Parsimony-based pedigree analysis and individual-based landscape genetics suggest topography to restrict dispersal and connectivity in the endangered capercaillie. Biological Conservation, 152: 241-252. doi: 10.1016/j.biocon.2012.04.011
Kamm, U.; Gugerli, F.; Rotach, P.; Edwards, P.; Holderegger, R., 2012: Seltenes und zerstreutes Vorkommen: Auswirkungen auf den Paarungserfolg des Speierlings. Schweizerische Zeitschrift für Forstwesen, 163, 4: 130-136. doi: 10.3188/szf.2012/0130
Keller, D.; Jung, E.; Holderegger, R., 2012: Development of microsatellite markers for the wetland grasshopper Stethophyma grossum. Conservation Genetics Resources, 4, 2: 507-509. doi: 10.1007/s12686-011-9586-1
Keller, D.; Van Strien, M.J.; Holderegger, R., 2012: Do landscape barriers affect functional connectivity of populations of an endangered damselfly?. Freshwater Biology, 57, 7: 1373-1384. doi: 10.1111/j.1365-2427.2012.02797.x
Wagner, H.H.; Murphy, M.A.; Holderegger, R.; Waits, L., 2012: Developing an interdisciplinary, distributed graduate course for twenty-first century scientists. BioScience, 62, 2: 182-188. doi: 10.1525/bio.2012.62.2.11
Buehler, D.; Graf, R.; Holderegger, R.; Gugerli, F., 2012: Contemporary gene flow and mating system of Arabis alpina in a Central European alpine landscape. Annals of Botany, 109, 7: 1359-1367. doi: 10.1093/aob/mcs066
Zumsteg, A.; Luster, J.; Göransson, H.; Smittenberg, R.H.; Brunner, I.; Bernasconi, S.M.; Zeyer, J.; Frey, B., 2012: Bacterial, archaeal and fungal succession in the forefield of a receding glacier. Microbial Ecology, 63, 3: 552-564. doi: 10.1007/s00248-011-9991-8
Aavik, T.; Edwards, P.J.; Holderegger, R.; Graf, R.; Billeter, R., 2012: Genetic consequences of using seed mixtures in restoration: a case study of a wetland plant Lychnis flos-cuculi. Biological Conservation, 145, 1: 195-204. doi: 10.1016/j.biocon.2011.11.004
Barthe, S.; Gugerli, F.; Barkley, N.A.; Maggia, L.; Cardi, C.; Scotti, I., 2012: Always look on both sides: phylogenetic information conveyed by simple sequence repeat allele sequences. PLoS One, 7, 7: e40699 (9 pp.). doi: 10.1371/journal.pone.0040699
Scheidegger, C.; Bergamini, A.; Bürgi, M.; Holderegger, R.; Lachat, T.; Schnyder, N.; Senn-Irlet, B.; Wermelinger, B.; Bollmann, K., 2011: Gestion forestière. In: Lachat, T.; Scheidegger, C.; Vittoz, P.; Walter, T.; Pauli, D.; Gonseth, Y.; Klaus, G. (eds), 2011: Evolution de la biodiversité en Suisse depuis 1900. Avons-nous touché le fond?. Zürich; Bern, Bristol-Stiftung; Haupt. 124-160.
Di Giulio, M.; Holderegger, R.; Nobis, M.; Righetti, A.; Senn, J.; Stofer, S., 2011: Trafic et infrastructures de transport. In: Lachat, T.; Pauli, D.; Gonseth, Y.; Klaus, G.; Scheidegger, C.; Vittoz, P.; Walter, T. (eds), 2011: Evolution de la biodiversité en Suisse depuis 1900. Avons-nous touché le fond?. Zürich; Bern, Bristol-Stiftung; Haupt. 264-295.
Waser, N.M.; Wirth, L.R.; Graf, R.; Gugerli, F.; Landergott, U.; Erhardt, A.; Linder, H.P.; Holderegger, R., 2011: Effects of floral neighborhood on seed set and degree of outbreeding in a high-alpine cushion plant. Oecologia, 167, 2: 427-434. doi: 10.1007/s00442-011-1985-1
Buehler, D.; Graf, R.; Holderegger, R.; Gugerli, F., 2011: Using the 454 pyrosequencing-based technique in the development of nuclear microsatellite loci in the alpine plant Arabis alpina (Brassicaceae). American Journal of Botany, 98, 5: e103-e105. doi: 10.3732/ajb.1000488
Holderegger, R.; Thiel-Egenter, C.; Parisod, C., 2011: Marie Brockmann-Jerosch and her influence on Alpine phylogeography. Alpine Botany, 121, 1: 5-10. doi: 10.1007/s00035-010-0086-9
Meirmans, P.G.; Goudet, J.; IntraBioDiv Consortium; Gaggiotti, O.E., 2011: Ecology and life history affect different aspects of the population structure of 27 high-alpine plants. Molecular Ecology, 20, 15: 3144-3155. doi: 10.1111/j.1365-294X.2011.05164.x
Keller, D.; Brodbeck, S.; Flöss, I.; Vonwil, G.; Holderegger, R., 2011: Ausbreitung und Besiedlungsgeschichte der Zierlichen Moosjungfer Leucorrhinia caudalis in der Schweiz (Odonata: Libellulidae). Entomo Helvetica, 4: 139-152.
Angelone, S.; Kienast, F.; Holderegger, R., 2011: Where movement happens: scale-dependent landscape effects on genetic differentiation in the European tree frog. Ecography, 34, 5: 714-722. doi: 10.1111/j.1600-0587.2010.06494.x
Kremer, A.; Vinceti, B.; Alia, R.; Burczyk, J.; Cavers, S.; Degen, B.; Finkeldey, R.; Fluch, S.; Gömöry, D.; Gugerli, F.; Koelewijn, H.P.; Koskela, J.; Lefèvre, F.; Morgante, M.; Mueller-Starck, G.; Plomion, C.; Taylor, G.; Turok, J.; Savolainen, O.; Ziegenhagen, B., 2011: Forest ecosystem genomics and adaptation: EVOLTREE conference report. Tree Genetics and Genomes, 7, 4: 869-875. doi: 10.1007/s11295-011-0378-2
Kamm, U.; Gugerli, F.; Rotach, P.; Edwards, P.; Holderegger, R., 2011: Genetic consequences of low local tree densities - implications for the management of naturally rare, insect pollinated species in temperate forests. Forest Ecology and Management, 262, 6: 1047-1053. doi: 10.1016/j.foreco.2011.05.040
Thiel-Egenter, C.; Alvarez, N.; Holderegger, R.; Tribsch, A.; Englisch, T.; Wohlgemuth, T.; Colli, L.; Gaudeul, M.; Gielly, L.; Jogan, N.; Linder, H.P.; Negrini, R.; Niklfeld, H.; Pellecchia, M.; Rioux, D.; Schönswetter, P.; Taberlet, P.; Van Loo, M.; Winkler, M.; ... Gugerli, F., 2011: Break zones in the distributions of alleles and species in alpine plants. Journal of Biogeography, 38, 4: 772-782. doi: 10.1111/j.1365-2699.2010.02441.x
Bolliger, J.; Keller, D.; Holderegger, R., 2011: When landscape variables do not explain migration rates: an example from an endangered dragonfly, Leucorrhinia caudalis (Odonata: Libellulidae). European Journal of Entomology, 108, 2: 327-330. doi: 10.14411/eje.2011.039
Scheidegger, C.; Bergamini, A.; Bürgi, M.; Holderegger, R.; Lachat, T.; Schnyder, N.; Senn-Irlet, B.; Wermelinger, B.; Bollmann, K., 2010: Waldwirtschaft. In: Lachat, T.; Scheidegger, C.; Vittoz, P.; Walter, T.; Pauli, D.; Gonseth, Y.; Klaus, G. (eds), 2010: Wandel der Biodiversität in der Schweiz seit 1900. Ist die Talsohle erreicht?. Zürich; Bern, Bristol-Stiftung; Haupt. 124-160.
Di Giulio, M.; Holderegger, R.; Nobis, M.; Righetti, A.; Senn, J.; Stofer, S., 2010: Verkehr und Verkehrsinfrastruktur. In: Lachat, T.; Pauli, D.; Gonseth, Y.; Klaus, G.; Scheidegger, C.; Vittoz, P.; Walter, T. (eds), 2010: Wandel der Biodiversität in der Schweiz seit 1900. Ist die Talsohle erreicht?. Zürich; Bern, Bristol-Stiftung; Haupt. 266-297.
Herrmann, D.; Poncet, B.N.; Manel, S.; Rioux, D.; Gielly, L.; Taberlet, P.; Gugerli, F., 2010: Selection criteria for scoring amplified fragment length polymorphisms (AFLPs) positively affect the reliability of population genetic parameter estimates. Genome, 53, 4: 302-310. doi: 10.1139/g10-006
Holderegger, R.; Buehler, D.; Gugerli, F.; Manel, S., 2010: Landscape genetics of plants. Trends in Plant Science, 15, 12: 675-683. doi: 10.1016/j.tplants.2010.09.002
Segelbacher, G.; Cushman, S.A.; Epperson, B.K.; Fortin, M.; Francois, O.; Hardy, O.J.; Holderegger, R.; Taberlet, P.; Waits, L.P.; Manel, S., 2010: Applications of landscape genetics in conservation biology: concepts and challenges. Conservation Genetics, 11, 2: 375-385. doi: 10.1007/s10592-009-0044-5
Poncet, B.N.; Herrmann, D.; Gugerli, F.; Taberlet, P.; Holderegger, R.; Gielly, L.; Rioux, D.; Thuiller, W.; Aubert, S.; Manel, S., 2010: Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina. Molecular Ecology, 19, 14: 2896-2907. doi: 10.1111/j.1365-294X.2010.04696.x
Parisod, C.; Holderegger, R.; Brochmann, C., 2010: Evolutionary consequences of autopolyploidy. New Phytologist, 186, 1: 5-17. doi: 10.1111/j.1469-8137.2009.03142.x
Holderegger, R.; Di Giulio, M., 2010: The genetic effects of roads: a review of empirical evidence. Basic and Applied Ecology, 11, 6: 522-531. doi: 10.1016/j.baae.2010.06.006
Kamm, U.; Gugerli, F.; Rotach, P.; Edwards, P.; Holderegger, R., 2010: Open areas in a landscape enhance pollen-mediated gene flow of a tree species: evidence from northern Switzerland. Landscape Ecology, 25, 6: 903-911. doi: 10.1007/s10980-010-9468-z
Jacob, G.; Debrunner, R.; Gugerli, F.; Schmid, B.; Bollmann, K., 2010: Field surveys of capercaillie (Tetrao urogallus) in the Swiss Alps underestimated local abundance of the species as revealed by genetic analyses of non-invasive samples. Conservation Genetics, 11, 1: 33-44. doi: 10.1007/s10592-008-9794-8
Manel, S.; Joost, S.; Epperson, B.K.; Holderegger, R.; Storfer, A.; Rosenberg, M.S.; Scribner, K.T.; Bonin, A.; Fortin, M., 2010: Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field. Molecular Ecology, 19, 17: 3760-3772. doi: 10.1111/j.1365-294X.2010.04717.x
Jimenez, A.; Holderegger, R.; Csencsics, D.; Quintanilla, L.G., 2010: Microsatellites reveal substantial among-population genetic differentiation and strong inbreeding in the relict fern Dryopteris aemula. Annals of Botany, 106, 1: 149-155. doi: 10.1093/aob/mcq094
Storfer, A.; Murphy, M.a.; Spear, S.F.; Holderegger, R.; Waits, L.P., 2010: Landscape genetics: where are we now?. Molecular Ecology, 19, 17: 3496-3514. doi: 10.1111/j.1365-294X.2010.04691.x
Anderson, C.D.; Epperson, B.K.; Fortin, M.; Holderegger, R.; James, P.M.A.; Rosenberg, M.S.; Scribner, K.T.; Spear, S., 2010: Considering spatial and temporal scale in landscape-genetic studies of gene flow. Molecular Ecology, 19, 17: 3565-3575. doi: 10.1111/j.1365-294X.2010.04757.x
Manel, S.; Poncet, B.N.; Legendre, P.; Gugerli, F.; Holderegger, R., 2010: Common factors drive adaptive genetic variation at different spatial sclaes in Arabis alpina. Molecular Ecology, 19, 17: 3824-3835. doi: 10.1111/j.1365-294X.2010.04716.x
Gugerli, F.; Sperisen, C., 2010: Genetische Struktur von Waldbäumen im Alpenraum als Folge (post)glazialer Populationsgeschichte. Schweizerische Zeitschrift für Forstwesen, 161, 6: 207-215. doi: 10.3188/szf.2010.0207
Bolliger, J.; Le Lay, G.; Holderegger, R., 2010: Landscape genetics. How landscapes affect ecological processes. GAIA: Ecological Perspectives for Science and Society, 19, 3: 238-240. doi: 10.14512/gaia.19.3.19
Keller, D.; Brodbeck, S.; Flöss, I.; Vonwil, G.; Holderegger, R., 2010: Ecological and genetic measurements of dispersal in a threatened dragonfly. Biological Conservation, 143, 11: 2658-2663. doi: 10.1016/j.biocon.2010.07.008
Csencsics, D.; Brodbeck, S.; Holderegger, R., 2010: Cost-effective, species-specific microsatellite development for the endangered dwarf bulrush (Typha minima) using next-generation sequencing technology. Journal of Heredity, 101, 6: 789-793. doi: 10.1093/jhered/esq069
Gugerli, F.; Rüegg, M.; Vendramin, G., 2009: Gradual decline in genetic diversity in Swiss stone pine populations (Pinus cembra) across Switzerland suggests postglacial re-colonization into the Alps from a common eastern glacial refugium. Botanica Helvetica, 119, 1: 13-22. doi: 10.1007/s00035-009-0052-6
Höhn, M.; Gugerli, F.; Abran, P.; Bisztray, G.; Buonamici, A.; Cseke, K.; Hufnagel, L.; Quintela-Sabarís, C.; Sebastiani, F.; Vendramin, G.G., 2009: Variation in the chloroplast DNA of Swiss stone pine (Pinus cembra L.) reflects contrasting post-glacial history of populations from the Carpathians and the Alps. Journal of Biogeography, 36, 9: 1798-1806. doi: 10.1111/j.1365-2699.2009.02122.x
Thiel-Egenter, C.; Holderegger, R.; Brodbeck, S.; IntraBioDiv Consortium; Gugerli, F., 2009: Concordant genetic breaks, identified by combining clustering and tessellation methods, in two co-distributed alpine plant species. Molecular Ecology, 18, 21: 4495-4507. doi: 10.1111/j.1365-294X.2009.04360.x
Kamm, U.; Rotach, P.; Gugerli, F.; Siroky, M.; Edwards, P.; Holderegger, R., 2009: Frequent long-distance gene flow in a rare temperate forest tree (Sorbus domestica) at the landscape scale. Heredity, 103, 6: 476-482. doi: 10.1038/hdy.2009.70
Angelone, S.; Holderegger, R., 2009: Population genetics suggests effectiveness of habitat connectivity measures for the European tree frog in Switzerland. Journal of Applied Ecology, 46, 4: 879-887. doi: 10.1111/j.1365-2664.2009.01670.x
Keller, D.; Brodbeck, S.; Holderegger, R., 2009: Characterization of microsatellite loci in Leucorrhinia caudalis, a rare dragonfly endangered throughout Europe. Conservation Genetics Resources, 1, 1: 179-181. doi: 10.1007/s12686-009-9044-5
Alvarez, N.; Thiel-Egenter, C.; Tribsch, A.; Holderegger, R.; Manel, S.; Schönswetter, P.; Taberlet, P.; Brodbeck, S.; Gaudeul, M.; Gielly, L.; Küpfer, P.; Mansion, G.; Negrini, R.; Paun, O.; Pellecchia, M.; Rioux, D.; Schüpfer, F.; Van Loo, M.; Winkler, M.; ... IntraBioDiv Consortium, 2009: History or ecology? Substrate types as a major driver of spatial genetic structure in Alpine plants. Ecology Letters, 12, 7: 632-640. doi: 10.1111/j.1461-0248.2009.01312.x
Balkenhol, N.; Gugerli, F.; Cushman, S.A.; Waits, L.P.; Coulon, A.; Arntzen, J.W.; Holderegger, R.; Wagner, H.H., 2009: Identifying future research needs in landscape genetics: where to from here?. Landscape Ecology, 24: 455-463. doi: 10.1007/s10980-009-9334-z
Holderegger, R.; Thiel-Egenter, C., 2009: A discussion of different types of glacial refugia used in mountain biogeography and phylogeography. Journal of Biogeography, 36, 3: 476-480. doi: 10.1111/j.1365-2699.2008.02027.x
Wirth, L.R.; Graf, R.; Brodbeck, S.; Reber-Funk, C.; Holderegger, R.; Landergott, U., 2009: Fully informative microsatellite markers for the tetraploid plant Eritrichium nanum (Boraginaceae). Molecular Ecology Resources, 9, 1: 312-314. doi: 10.1111/j.1755-0998.2008.02449.x
Thiel-Egenter, C.; Gugerli, F.; Alvarez, N.; Brodbeck, S.; Cieslak, E.; Colli, L.; Englisch, T.; Gaudeul, M.; Gielly, L.; Korbecka, G.; Negrini, R.; Paun, O.; Pellecchia, M.; Rioux, D.; Ronikier, M.; Schönswetter, P.; Schüpfer, F.; Taberlet, P.; Tribsch, A.; ... IntraBioDiv Consortium, 2009: Effects of species traits on the genetic diversity of high-mountain plants: a multi-species study across the Alps and the Carpathians. Global Ecology and Biogeography, 18, 1: 78-87. doi: 10.1111/j.1466-8238.2008.00421.x
Salzer, K.; Sebastiani, F.; Gugerli, F.; Buonamici, A.; Vendramin, G.G., 2009: Isolation and characterization of polymorphic nuclear microsatellite loci in Pinus cembra L. Molecular Ecology Resources, 9, 3: 858-861. doi: 10.1111/j.1755-0998.2008.02396.x
Di Giulio, M.; Holderegger, R.; Tobias, S., 2009: Effects of habitat and landscape fragmentation on humans and biodiversity in densely populated landscapes. Journal of Environmental Management, 90, 10: 2959-2968. doi: 10.1016/j.jenvman.2009.05.002
Landergott, U.; Schneller, J.J.; Holderegger, R.; Thompson, J.D., 2009: Sex-ratio variation and spatial distribution of nuclear and cytoplasmic sex-determining genes in gynodioecious Thymus praecox across altitudinal gradients. Evolutionary Ecology Research, 11: 23-42.
Csencsics, D.; Angelone, S.; Paniga, M.; Rotach, P.; Rudow, A.; Sabiote, E.; Schwab, P.; Wohlhauser, P.; Holderegger, R., 2009: A large scale survey of Populus nigra presence and genetic introgression from non-native poplars in Switzerland based on molecular identification. Journal for Nature Conservation, 17, 3: 142-149. doi: 10.1016/j.jnc.2009.01.004
Yu, F.; Krüsi, B.O.; Schneller, J.J.; Schütz, M.; Tang, M.; Wildi, O., 2009: Positive correlation between vegetation dissimilarity and genetic differentiation of Carex sempervirens. Flora, 204, 9: 651-657. doi: 10.1016/j.flora.2008.09.006
Tollefsrud, M.M.; Kissling, R.; Gugerli, F.; Johnsen, Ø.; Skrøppa, T.; Cheddadi, R.; Van der Knaap, W.O.; Latałowa, M.; Terhürne-Berson, R.; Litt, T.; Geburek, T.; Brochmann, C.; Sperisen, C., 2008: Genetic consequences of glacial survival and postglacial colonization in Norway spruce: combined analysis of mitochondrial DNA and fossil pollen. Molecular Ecology, 17, 18: 4134-4150. doi: 10.1111/j.1365-294X.2008.03893.x
Gugerli, F.; Brodbeck, S.; Holderegger, R., 2008: Utility of multilocus genotypes for taxon assignment in stands of closely related European white oaks from Switzerland. Annals of Botany, 102, 5: 855-863. doi: 10.1093/aob/mcn164
Gugerli, F.; Gall, R.; Meier, F.; Wermelinger, B., 2008: Pronounced fluctuations of spruce bark beetle (Scolytinae: Ips typographus) populations do not invoke genetic differentiation. Forest Ecology and Management, 256, 3: 405-409. doi: 10.1016/j.foreco.2008.04.038
Holderegger, R.; Wagner, H.H., 2008: Landscape genetics. BioScience, 58, 3: 199-207. doi: 10.1641/B580306
Holderegger, R.; Herrmann, D.; Poncet, B.; Gugerli, F.; Thuiller, W.; Taberlet, P.; Gielly, L.; Rioux, D.; Brodbeck, S.; Aubert, S.; Manel, S., 2008: Land ahead: using genome scans to identify molecular markers of adaptive relevance. Plant Ecology and Diversity, 1, 2: 273-283. doi: 10.1080/17550870802338420
Holderegger, R.; Häner, R.; Csencsics, D.; Angelone, S.; Hoebee, S.E., 2008: S-allele diversity suggests no mate limitation in small populations of a self-incompatible plant. Evolution, International Journal of Organic Evolution, 62, 11: 2922-2928. doi: 10.1111/j.1558-5646.2008.00498.x
Scotti, I.; Gugerli, F.; Pastorelli, R.; Sebastiani, F.; Vendramin, G.G., 2008: Maternally and paternally inherited molecular markers elucidate population patterns and inferred dispersal processes on a small scale within a subalpine stand of Norway spruce (Picea abies (L.) Karst.). Forest Ecology and Management, 255, 11: 3806-3812. doi: 10.1016/j.foreco.2008.03.023
Gugerli, F.; Englisch, T.; Niklfeld, H.; Tribsch, A.; Mirek, Z.; Ronikier, M.; Zimmermann, N.E.; Holderegger, R.; Taberlet, P.; IntraBioDiv Consortium, 2008: Relationships among levels of biodiversity and the relevance of intraspecific diversity in conservation - a project synopsis. Perspectives in Plant Ecology, Evolution and Systematics, 10, 4: 259-281. doi: 10.1016/j.ppees.2008.07.001
Raffl, C.; Holderegger, R.; Parson, W.; Erschbamer, B., 2008: Patterns in genetic diversity of Trifolium pallescens populations do not reflect chronosequence on alpine glacier forelands. Heredity, 100, 5: 526-532. doi: 10.1038/hdy.2008.8
Gugerli, F.; Brodbeck, S.; Holderegger, R., 2008: Insertions-deletions in a microsatellite flanking region may be resolved by variation in stuttering patterns. Plant Molecular Biology Reporter, 26, 3: 255-262. doi: 10.1007/s11105-008-0034-7
Suter, W.; Bollmann, K.; Holderegger, R., 2007: Landscape permeability: from individual dispersal to population persistence. In: Kienast, F.; Wildi, O.; Ghosh, S. (eds), 2007: A changing world. Challenges for landscape research. Dordrecht, Springer. 157-174. doi: 10.1007/978-1-4020-4436-6_11
Holderegger, R.; Gugerli, F.; Scheidegger, C.; Taberlet, P., 2007: Integrating population genetics with landscape ecology to infer spatio-temporal processes. In: Kienast, F.; Wildi, O.; Ghosh, S. (eds), 2007: A changing world. Challenges for landscape research. Dordrecht, Springer. 145-156. doi: 10.1007/978-1-4020-4436-6_10
Angelone, S.; Hilfiker, K.; Holderegger, R.; Bergamini, A.; Hoebee, S.E., 2007: Regional population dynamics define the local genetic structure in Sorbus torminalis. Molecular Ecology, 16, 6: 1291-1301. doi: 10.1111/j.0962-1083.2006.03202.x
Bettin, O.; Cornejo, C.; Edwards, P.J.; Holderegger, R., 2007: Phylogeography of the high alpine plant Senecio halleri (Asteraceae) in the European Alps: in situ glacial survival with postglacial stepwise dispersal into peripheral areas. Molecular Ecology, 16, 12: 2517-2524. doi: 10.1111/j.1365-294X.2007.03273.x
Hoebee, S.E.; Arnold, U.; Düggelin, C.; Gugerli, F.; Brodbeck, S.; Rotach, P.; Holderegger, R., 2007: Mating patterns and contemporary gene flow by pollen in a large continuous and a small isolated population of the scattered forest tree Sorbus torminalis. Heredity, 99, 1: 47-55. doi: 10.1038/sj.hdy.6800962
Werth, S.; Gugerli, F.; Holderegger, R.; Wagner, H.H.; Csencsics, D.; Scheidegger, C., 2007: Landscape-level gene flow in Lobaria pulmonaria, an epiphytic lichen. Molecular Ecology, 16, 13: 2807-2815. doi: 10.1111/j.1365-294X.2007.03344.x
Gugerli, F.; Walser, J.-C.; Dounavi, K.; Holderegger, R.; Finkeldey, R., 2007: Coincidence of small-scale spatial discontinuities in leaf morphology and nuclear microsatellite variation of Quercus petraea and Q. robur in a mixed forest. Annals of Botany, 99, 4: 713-722. doi: 10.1093/aob/mcm006
Hoebee, S.E.; Menn, C.; Rotach, P.; Finkeldey, R.; Holderegger, R., 2006: Spatial genetic structure of Sorbus torminalis: the extent of clonal reproduction in natural stands of a rare tree species with a scattered distribution. Forest Ecology and Management, 226, 1-3: 1-8. doi: 10.1016/j.foreco.2005.12.024
Landergott, U.; Naciri, Y.; Schneller, J.J.; Holderegger, R., 2006: Allelic configuration and polysomic inheritance of highly variable microsatellites in tetraploid gynodiaecious Thymus praecox agg.. Theoretical and Applied Genetics, 113, 3: 453-465. doi: 10.1007/s00122-006-0310-6
Werth, S.; Wagner, H.H.; Gugerli, F.; Holderegger, R.; Csencsics, D.; Kalwij, J.M.; Scheidegger, C., 2006: Quantifying dispersal and establishment limitation in a population of an epiphytic lichen. Ecology, 87, 8: 2037-2046. doi: 10.1890/0012-9658(2006)87[2037:QDAELI]2.0.CO;2
Werth, S.; Wagner, H.H.; Holderegger, R.; Kalwij, J.M.; Scheidegger, C., 2006: Effect of disturbances on the genetic diversity of an old-forest associated lichen. Molecular Ecology, 15, 4: 911-921. doi: 10.1111/j.1365-294X.2006.02838.x
Holderegger, R.; Kamm, U.; Gugerli, F., 2006: Adaptive vs. neutral genetic diversity: implications for landscape genetics. Landscape Ecology, 21, 6: 797-807. doi: 10.1007/s10980-005-5245-9
Fournier, N.; Rigling, A.; Dobbertin, M.; Gugerli, F., 2006: Faible différenciation génétique, à partir d'amplification aléatoire d'ADN polymorphe (RAPD), entre les types de pin sylvestre (Pinus sylvestris L.) d'altitude et de plaine dans les Alpes à climat continental. Annals of Forest Science, 63, 4: 431-439. doi: 10.1051/forest:2006023
Holderegger, R.; Angelone, S.; Brodbeck, S.; Csencsics, D.; Gugerli, F.; Hoebee, S.E.; Finkeldey, R., 2005: Application of genetic markers to the discrimination of pure European Black Poplar (Populus nigra) from American Black Poplar (P. deltoides) and Hybrid Poplars (P. x canadensis) in Switzerland. Trees: Structure and Function, 19, 6: 742-747. doi: 10.1007/s00468-005-0006-6
Wagner, H.H.; Holderegger, R.; Werth, S.; Gugerli, F.; Hoebee, S.E.; Scheidegger, C., 2005: Variogram analysis of the spatial genetic structure of continuous populations using multilocus microsatellite data. Genetics, 169, 3: 1739-1752. doi: 10.1534/genetics.104.036038
Holderegger, R., 2005: Frankham, R.; Ballou, J.D.; Briscoe, D.A., 2004: A primer of conservation genetics. Cambridge, Cambridge University Press. 220 pp. [book review]. Plant Systematics and Evolution, 255: 111-115. doi: 10.1007/s00606-005-0353-1
Schönswetter, P.; Stehlik, I.; Holderegger, R.; Tribsch, A., 2005: Molecular evidence for glacial refugia of mountain plants in the European Alps. Molecular Ecology, 14, 11: 3547-3555. doi: 10.1111/j.1365-294X.2005.02683.x
Holderegger, R.; Walser, J.; Gugerli, F.; Hoebee, S.E.; Scheidegger, C., 2005: Microsatellites reveal regional population differentiation and isolation in Lobaria pulmonaria, an epiphytic lichen. Molecular Ecology, 14, 2: 457-467. doi: 10.1111/j.1365-294x.2004.02423.x
Jaeger, J.; Holderegger, R., 2005: Schwellenwerte der Landschaftszerschneidung. GAIA: Ecological Perspectives for Science and Society, 14, 2: 113-118. doi: 10.14512/gaia.14.2.10
Gugerli, F.; Parducci, L.; Petit, R.J., 2005: Ancient plant DNA: review and prospects. New Phytologist, 166, 2: 409-418. doi: 10.1111/j.1469-8137.2005.01360.x
Galeuchet, D.J.; Holderegger, R., 2005: Erhaltung und Wiederansiedlung des Kleinen Rohrkolbens (Typha minima) - Vegetationsaufnahmen, Monitoring und genetische Herkunftsanalysen. Botanica Helvetica, 115, 1: 15-32. doi: 10.1007/s00035-005-0704-0
Hilfiker, K.; Gugerli, F.; Schütz, J.; Rotach, P.; Holderegger, R., 2004: Low RAPD variation and female-biased sex ratio indicate genetic drift in small populations of the dioecious conifer Taxus baccata in Switzerland. Conservation Genetics, 5, 3: 357-365. doi: 10.1023/B:COGE.0000031144.95293.1b
Hilfiker, K.; Holderegger, R.; Rotach, P.; Gugerli, F., 2004: Dynamics of genetic variation in Taxus baccata: local versus regional perspectives. Canadian Journal of Botany, 82: 219-227. doi: 10.1139/B03-136
Walser, J.-C.; Gugerli, F.; Holderegger, R.; Kuonen, D.; Scheidegger, C., 2004: Recombination and clonal propagation in different populations of the lichen Lobaria pulmonaria. Heredity, 93, 4: 322-329. doi: 10.1038/sj.hdy.6800505
Holderegger, R.; Stehlik, I.; Smith, R.I.L.; Abbott, R.J., 2003: Populations of Antarctic Hairgrass (Deschampsia antarctica) show low genetic diversity. Arctic, Antarctic, and Alpine Research, 35, 2: 214-217. doi: 10.1657/1523-0430(2003)035[0214:Poahda]2.0.Co;2
Holderegger, R.; Abbott, R.J., 2003: Phylogeography of the Arctic‐Alpine Saxifraga oppositifolia (Saxifragaceae) and some related taxa based on cpDNA and ITS sequence variation. American Journal of Botany, 90, 6: 931-936. doi: 10.3732/ajb.90.6.931
Landergott, U.; Kozlowski, G.; Schneller, J.J.; Holderegger, R., 2003: The importance of recent population history for understanding genetic diversity in threatened species, with special reference to Dryopteris cristata. Fern Gazette, 17, 1: 39-51.
Holderegger, R., 2002: De Nettancourt, D.: Incompatibility and incongruity in wild and cultivated plants. [book review]. Plant Systematics and Evolution, 232: 263-266. doi: 10.1007/s006060200048
Stehlik, I.; Blattner, F.R.; Holderegger, R.; Bachmann, K., 2002: Nunatak survival of the high Alpine plant Eritrichium nanum (L.) Gaudin in the central Alps during the ice ages. Molecular Ecology, 11, 10: 2027-2036. doi: 10.1046/j.1365-294X.2002.01595.x
Holderegger, R.; Stehlik, I.; Abbott, J., 2002: Molecular analysis of the Pleistocene history of Saxifraga oppositifolia in the Alps. Molecular Ecology, 11, 8: 1409-1418. doi: 10.1046/j.1365-294X.2002.01548.x
Galeuchet, D.J.; Holderegger, R.; Rutishauser, R.; Schneller, J.J., 2002: Isozyme diversity and reproduction of Typha minima populations on the upper river Rhine. Aquatic Botany, 74, 1: 19-32. doi: 10.1016/S0304-3770(02)00021-9
Gugerli, F.; Holderegger, R., 2001: Nunatak survival, tabula rasa and the influence of the Pleistocene ice-ages on plant evolution in mountain areas. Trends in Plant Science, 6, 9: 397-398. doi: 10.1016/S1360-1385(01)02053-2
Gugerli, F.; Sperisen, C.; Büchler, U.; Brunner, I.; Brodbeck, S.; Palmer, J.D.; Qiu, Y., 2001: The evolutionary split of pinaceae from other conifers: evidence from an intron loss and a multigene phylogeny. Molecular Phylogenetics and Evolution, 21, 2: 167-175. doi: 10.1006/mpev.2001.1004
Gugerli, F.; Senn, J.; Anzidei, M.; Madaghiele, A.; Büchler, U.; Sperisen, C.; Vendramin, G.G., 2001: Chloroplast microsatellites and mitochondrial nad1 intron 2 sequences indicate congruent phylogenetic relationships among Swiss stone pine (Pinus cembra), Siberian stone pine (P. sibirica), and Siberian dwarf pine (P. pumila). Molecular Ecology, 10, 6: 1489-1497. doi: 10.1046/j.1365-294X.2001.01285.x
Gugerli, F.; Sperisen, C.; Büchler, U.; Magni, F.; Geburek, T.; Jeandroz, S.; Senn, J., 2001: Haplotype variation in a mitochondrial tandem repeat of Norway spruce (Picea abies) populations suggests a serious founder effect during postglacial re-colonization of the western Alps. Molecular Ecology, 10, 5: 1255-1263. doi: 10.1046/j.1365-294X.2001.01279.x
Sperisen, C.; Büchler, U.; Gugerli, F.; Mátyás, G.; Geburek, T.; Vendramin, G.G., 2001: Tandem repeats in plant mitochondrial genomes: application to the analysis of population differentiation in the conifer Norway spruce. Molecular Ecology, 10, 1: 257-263. doi: 10.1046/j.1365-294X.2001.01180.x
Eichenberger, K.; Gugerli, F.; Schneller, J.J., 2000: Morphological and molecular diversity of Swiss common bean cultivars (Phaseolus vulgaris L., Fabaceae). Botanica Helvetica, 110, 1: 61-77. doi: 10.5169/seals-73587
Sperisen, C.; Gugerli, F.; Büchler, U.; Mátyás, G., 2000: Comparison of two rapid DNA extraction protocols for gymnosperms for application in popupation genetic and phylogenetic studies. Forest Genetics, 7, 2: 133-136.
Von Flüe, I.; Gugerli, F.; Holderegger, R.; Schneller, J.J., 1999: Genetic and morphological variability in alpine Saxifraga oppositifolia L. after colonization. Feddes Repertorium, 110, 7-8: 555-559. doi: 10.1002/fedr.19991100716
Gugerli, F.; Eichenberger, K.; Schneller, J.J., 1999: Promiscuity in populations of the cushion plant Saxifraga oppositifolia in the Swiss Alps as inferred from random amplified polymorphic DNA (RAPD). Molecular Ecology, 8, 3: 453-461. doi: 10.1046/j.1365-294X.1999.00586.x
Schneller, J.; Holderegger, R.; Gugerli, F.; Eichenberger, K.; Lutz, E., 1998: Patterns of genetic variation detected by RAPDs suggest a single origin with subsequent mutations and long‐distance dispersal in the apomictic fern Dryopteris remota (Dryopteridaceae) . American Journal of Botany, 85, 7: 1038-1042. doi: 10.2307/2446372
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